RNA id: XM_021592906.2


Basic Information

Item Value
RNA id XM_021592906.2
length 3115
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110512652
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20014592 ~ 20018502 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTACACTTGACTTGAGTAAAACTAGAAAAGGTCAATTTTctgaagaaaatgtgtgtgctCTATAGTCTACAATAGTGAATAGGAGCGAACACGAATCTCACACATTCTCCATCCATGAGTGTTCTGGTCTCCCTGCATGGGCGTATAGTAGAGACATCTACTCCAGAGGTACTTGCTTAGGTCACAACAACTGATGAGCTGTTTGGGTAATATGGCAGAACTCTCATGTCCTGTGGCTGGATTCCTCAATACAAGCTCTGAAAAACATTGTCACATTGGCTGCCACCCAGAGCCATAGAGACCTACAGAAATGTCATGGGGGAAAGCAAAGATAAACTCTGTGGGAAAAGTGTTGCTTCTGTTCTACTCAGGCTGTTGCCATAGTAACAGTGGGGCTCGTCAACAAAAGGCGATGTTTTGTTTTGGTAAAGATATTAACGGTAGCTAGCAAGCAGGCTATCAAAGGAATATTAGCTAGCTGATGAGATCAAATGGCTGATAAACGTGGTTTAGAGAAACTGGACTTTGGTGCATTAAGCATCGAGCAACAACAGCAACTCCGACAATTTAagATCACTACAAGAATCAACAATGAAAAATATTTGAGAGAGCATCCAGAGACGGAGGCCTTAATAAGCGACTTTTTAAGaGATGTATTTCTCAAAAGACCCACAGACATTCGAGAGTATGCAGCAGATTACTTCACCGACCCAAACCTTGGTTTGATCATTGGCTCCAAACTGCAGGGCGATCCTGCCGACACAGGCACAGACTGAATCCTTACCGGATTGTTTGGCAGTTCAACTGTTATTGAAGTGTAAAGCTGTAACAGGCCTCTTTCTCTGTGTTGTGTACATCCTCTGTATTGACTAGTTATTTGTTGCAAAGTAATGTGATACAAATATAAAACAGGATATAAAGTGGGTATGTACTGGCACCCAGGCAGATGTTCTTACTGAGCATCATTACAACAGGTTAGTTACAGGGCTACAGAAGGATGTTTTATACCGCTGGTTGAGAGGAAAATATTTATAGGCCTATAGGGTGGAGTGGACAGCCTCCTTACAGGAGTTCTCAGGGTAAAGTCTAAACGGGATCATTGGGACATCCCAACTCTGACATTACCCTATTGGAAGTTTAAATATTAAACGGTTAAGGTTACAAGGATTCTCGATAGCACTAACCGCTTTCTCAAGCCTCAGAGTTCCCCCTTCTGGTCTCCCGTTTCCGTTAACTCCCCAACTCAACAAAAAACATTTAAGCAAGATGAGAAAATGTGACAGCAGCAATACTGACCACACAGTTTAAATGTTTAATGACTTTAAAATCATCAAGTAACCAGCGCATCAGGCTTTGCTGTAAAAACATACATAGCGCAGTAAAAACAGGTCAAATCCATCTCACAAAGATGacaaaatcatttaaaattctgTTTGATTCacattttaaaatctgacacgctACAAAAATAGGCACATCTGGTTTAACAATTAAGTGATTGTATAGAGAAGACCCTGAAATTGTATAAAAACCTAGACCCTGATAATATTGGACATTTCAACAGCAGGCCTACGTAATACATTCTGTAACCAACATACTGTGGTAGAGGATGTGAATAGAGCTTTTAAATCCTGAGCAAACAGGCACAAATCATCAATGTTTAGACACGTCAATGTTAAAAGGTAACAGATTTCCTTTTTATATATACAAGTTTGTCAGTAACTTACATTGTTTGATATTTGTTCAGGCAATTGATTGCCCCTCTCTTATGGCTTGTATTGGGCTCCAGGAATCCAGAATTGTATCttagacacagatctaggatcagattacatTATGTAAAATCTTAAACATAATCCTTAGGGAGTAAAACACACAACTGATCTTCTACCAGTGTCTATAGGCAACATCATCCTACTGCCTTGATCTCAGAGTAGTGTACTACTACCAGCCTCCTGACCCTAGAGCCCATCTACATTACACAGTATGATGGAGCTATCAATACACACTGATCTGATCCAAGGTCAGTATTGCGTTATCCCCTAATGGTAATGGTTAGGATTCAAAGAGGGTAAGCTGGCCCTGGATCTGTGCCTATTAAACAatctcacacacatactgtactttaACCACAACATGCAAAGGAGTTTCAACCAACCGCGATACAAGTTAGTGTTGTTTTATGTTGTGTCTGACTTGCACAGCATTTTAACATTAAAGCGGATCCCCCTTTAAAAAACATGATTCCCGTTATTAGAACCCAATACACAACAGTAGGCCTACGTAGTACATTCTGTAACCAACATTCTGTGGTAGAGCATGCTCACTTTAGTACACAATGTAAAATTCTAGATTGGAGAGACTGATTTGAACGGCAATGACTACAACCATCACACACTGCAGCcatcccacagacacacacatccagtGTCCAATGTTTTTCACGTACAAACAAGTTTAGTCCCATACACACTTCCAATGTCTCCGGTCTTCACACAAACATGGCCTGGGACACAAAGCTGTCTCCACGAGATGTTCCAGTGGCAGGGGGGTGGTCCTCCTCTTTGTCATGGTAATCATTGGCCTTGTACTGGTTGGGGGCGTACAGGGGCGGGACTTCGTTCACCCTGGGTTCATCCCAGCCAGGGGGGGCGCCAGCGTAGCGCAACTCCTCCGCATCACGATTGTATTCCTCATCACTGTACGCGTCCAAGTCCTGGTGGGAAAGATAACCATATAAAATCATCTTAATAATCAAGTAAAAATAAGGAGAACCAATGCAGTCTTCATAGTATTCTAGTGACCCTTGCATTAGCGAACAAACTGACAGAGCAACACCCTTTGAGAGTCTTGATCCCAGGTCTTCTAGCCAATGGACAAACTtactaaccactgctccaatagggttAAATCACAGGGCTTACCAAGGCAATGGTTTCTACAGTATTAAAAACACATGTTTCCATCTATAGCATGTTCAGTATATCAGCTTCTATCCACATAGCAGCCCTCCATACCCTTCAGTTTCCTACACGTTCTCATGTTTGTGTACTGGTAAATAGGGCAATCATGTTGAGTAACTGATGAATAAATGATCATAAGTAGATGGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266528 lncRNA downstream 16715 19961733 ~ 19997877 (-) False G233136
TU266529 lncRNA downstream 16715 19992685 ~ 19997877 (-) True G233136
TU266486 lncRNA downstream 93979 19901086 ~ 19920613 (-) True G233098
TU266487 lncRNA downstream 109057 19898441 ~ 19905535 (-) False G233098
TU266480 lncRNA downstream 142363 19871266 ~ 19872229 (-) True G233096
TU266774 lncRNA upstream 331135 20349637 ~ 20349902 (-) True G233366
TU266841 lncRNA upstream 417041 20435543 ~ 20444642 (-) True G233430
TU266871 lncRNA upstream 452526 20471028 ~ 20474427 (-) True G233457
TU266874 lncRNA upstream 462818 20481320 ~ 20481533 (-) True G233460
TU266887 lncRNA upstream 478384 20496886 ~ 20497524 (-) True G233472
XM_036963613.1 mRNA downstream 82852 19914520 ~ 19931740 (-) False g6f-like-b
NM_001195273.1 mRNA downstream 87013 19914688 ~ 19927579 (-) True g6f-like-b
XM_021592890.2 mRNA downstream 118744 19877497 ~ 19895848 (-) True LOC110512609
XM_021592895.2 mRNA downstream 118916 19877497 ~ 19895676 (-) False LOC110512609
XM_021592863.2 mRNA downstream 163484 19842710 ~ 19851108 (-) False LOC110512516
XM_036971419.1 mRNA upstream 5408 20023910 ~ 20090697 (-) True dnah5
XM_021592920.2 mRNA upstream 244024 20262526 ~ 20270372 (-) True LOC110512703
XM_021592921.2 mRNA upstream 253872 20272374 ~ 20275308 (-) True LOC110512719
XR_005039838.1 mRNA upstream 534251 20552753 ~ 20554867 (-) True LOC118944500
XM_021593013.2 mRNA upstream 545146 20563648 ~ 20581532 (-) True LOC110512912
TU266428 other downstream 257974 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 365963 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 415491 19542102 ~ 19599101 (-) False rims2a
TU265301 other downstream 732454 19159300 ~ 19282138 (-) True LOC110511176
TU264859 other downstream 1412717 18599730 ~ 18601875 (-) True G231652
TU266934 other upstream 533281 20551783 ~ 20551997 (-) True G233513
TU267325 other upstream 630269 20648771 ~ 20651696 (-) True glipr2l
TU267728 other upstream 1160095 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 1160095 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 1426986 21445488 ~ 21455716 (-) True LOC110513321

Expression Profile