RNA id: XM_036971461.1


Basic Information

Item Value
RNA id XM_036971461.1
length 6835
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110512735
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20278178 ~ 20346029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTATGATGAAACAGAGTTTTATGGTATTGGCAACTATGAGTTCTTCATTATCGATGCGTTCGCTTAACTCAATAGAAATAACCTTTTAATTCATATGCTCACCATGCCCAGATAGTGCCACTTTACAGCCTGCCTACGACATGGACTCATTCTTTCCACAGTACTACATTAAATTATTCCCAATTTACACCTTTATAGTAGCATAGTTTTATTAAATTGACGTATAAACAGCGATCAAAACGTGAATGTGTTTTAAGTTAAATGTGGCACTCaataaaaatttttttttttttttaatgaaaactGTCGCGTTGTGTGCGTCCCAGTCCTACCGCTCGCTCGCCTTCTGGAGCTGGCAGTGAATTCCCAATGAGCATGATTGACGTTAGAGTGCTGACGAAGGCGGGCTTGGACTAGAACAGGGACAACAGGCATATACACGGATTATTCCAAAATCGCTTTCCAATTGCTATGAGAATATGAAAATGAATTGAAACAATGTTTGAGTCGACCAAAAACAGTCAGTGCCACATGCAGAAGATGGACTTTGGAGAAGTCAACACAGCCACAAAACCTCCAATAGGGAAGAGGATGAAGTCCCGAGCCCCTCCTCCGCCCCCGGCCCCCGAGCCTGCCCCCAGGAGAATCTTCCGTAACGCCGTGCCTGATGGGGGAGGCTCAGCGCAGGGCAGTATGGGCAGCATGGTGATGGACACCAAGGAGAACATGATGAGGACTAGCGTAGACCTCCATATCACTCTGCCTCAAGGCTACCAGACCAGCAGCACAGTGGATTGCAGCAAAGCACTCATGGACCTGTTGGTGGATCTGTGCAGCCGGTACCACCTGAACCCAGCCTATCACACCCTGGAGCTGCTGTCCAGCGAGGGCCTGTCCCTAGCCTTCAAACCCAACAGCCTGCTGGGGTCCCTGGACGTTGTTGCCATAAGCATCAGGGAGAAAGTGTTGCAGGACAAAGTGGTGCGGAAACCTCCGCCTAAAGTGCCAGAGAAAACAGTGCGTCTGGTGGTGAACTACCACAGGAGCCAGAAGGCGGTGGTGAGGGTGAGTCCCCTGGTGCCCCTGGGGAGCCTGGTCCCAGCCATCTGTGAGAAGTGTGAGTTTGACCCGTCCCATGTGCTGCTGCTGAAGGACAATGTCAGCAACCACGAGCTGGAGCTGGACAAGTGTCTGAGTGAGCTAGGCATCAGAGAGCTGTACGTACTGGACCAGACTCTTGTTCGTCAACCTAAAATGGCTTCTGCACCTGCTCTAAATTACTCAGAATACTTCCGTTCCAACACCTCAAGTTTCGGTGGGGCCGAGAAGAAAGGCCTGCTCGGATTCTTAAAGTTCAACAGAAGGAAATCAAAGACTGAAGAACAGTCGCCTACTATGGACATGGATGGTCTTGATAATAATATTATTCAAAATACTGAAAAACACTACAATggCCTGTCCACGGTGTCCATCGTGCCCTGTGTGGAGGCACGGCCCAGCACCCTGGGCCAGTCCCAGTCCGTCATGAACATCTCCAGGATGTCCCCCAGGATAGAGCTTAAGAAGAGGAGGGCCCCCCCGGCCCCCACACCCTGCCAGGGCTGCTACACACTGGAGGCCTACCAGgggGCTCCTGACTCAGAGAGTACACTGAGGAAGAGGAAGGCCCCAGCACCCCCTCCTACCCCTGCTACCTCTGTCACCCCAGCTCCTAGCACCCCAGCACCTCACACCTCTGTCCAGAtggccccctctccctccccagcccCCAGCTCGCCTACCCCCAGCTTGCCTGCGGAGGAGGACTCTGGCTCTGAGCTGAGCAATGGGTCTGtctacagcagcagcagtagtgggGTCGCCGCCGGCACCTCTGTCGCTGACACCTCAATGGCCGACTCTGATTCCGCCTCTAGCAGGGCTGATGTGTCCAAGCCCGGCCCTGATTCCACCCCCATCAACATTGCTGCCATGGCTGACTCCTCCCAAGACTCCACCCCCAGCAAGGTTGACACCGGCCCCAGGAGCAAGACTATGGTCAATGTCGCCCCTACCAGCAAGGTTGAAAAGGTTGACTCCGCCCCCAGGAGCAGTACTGACAAGGCCAAGCCCACCCCCGACTCGTCCCGCAGCACCACACcggaggagaccagaggagagtcTGCTCTTGGCCTGAAACTAGACGAGAAAGAGAACAACAGACACAGTGCCATGGGTGCTGAGCGTCCAGTGCCACTCAAACCTCTGCGAACCCCAGTACGGGAGCTCCCCCAGTTAGTCATCCCCTCACCCccgcctccccctccccctccctcagaCCCAGACTCCCCCGATGCCTCACCAGAGAACCACATGGAGGAGGCCCCTCAGTCTTGGCTGCACTCTCGGCAGCTCTCTGTGGCAGGACGCCAGACCCCAgacacagaggaagaggagacttTATCAATGGGCAGCAGTGGCAGCTTCCAGGATCAGGGCTATGCAGCCTCCGAGGGCATGGCTGAGGACTCTGGCCTGGTCAGCTCCCCCTTGGCCTCCGACACCACTCACCCTACCTCCCCTGACGGGAGCCTCTCCCTGGACTCTTCTGGCTCCTCTCACCCCATGATCCATCCCCTCACCAAGGACTGTTCTAGTGATAGTGACGAGGGCTGTGCCACGTGGGGCTCCAGACACAGCAGTGATATCAGCCACAACGACAAAGCAGGCAAAACAAAGGACATCTATGACGAGGACTCAGAGCTCACCGCTCAGCTCAACCAGACTCTGGCTGATCTGGATGCTGATCTTGCAAATATAAGTCACATAGATGCGGTTTCAGTGCAAGAGCACCCCTACGTGATGTCCACTGAGAGCAATGACATCCCGGTGTCTGTGGTGGATATGGAGGTCCCGGTCACAGCCATAGATCAAGTCCTGGAGGACTACGAGACACCGAGCATGACGGATCACCAAGTCACACTAATGAGTAGCTCTCAAAGAACGGACAATAAAAACCTGAACCACAGTCATCATCATGCAAGTGTTGGTGGCATacagaacaaaaacaacaacgccTGTACGTCTGACGGCTCCAGCAAAGTCAGCTCTGCTCAACCACAGCCCGCGCAGCGCCTCAAATCACCAGGGAAGAAGCTTGCCAATGGCACCACGGGGAAAGACCATACAGCAGGGGTCTCTAAGACTAAAGTAGAAGTTCAAAGATGGGAGTCCACTGAGGGAGCTGAGAGGAAAGCCTCACCTGTCAACAGCTCTCTCGCTGTCCCGGAGAGCCATTCCAAGTCCCCTGAGGAAGAGGTTCCCACCTATAGAGGCCACACTGCCTCACAGTCACAAATTAATATCACCTGTAGCCCAGTCTCTCGATTCGGTATGAAGACATTCACCATCATTCCTCCCAAGCCATTAGTTGCAACCCAGCCTCAGAAGCCAGCAGAGGCCACGGCCACTCTGAGAGCAGGTGCCATTAGAATTGACGATCAGGGTAACATGGTCAAAGTGCCCATCGCCCGAAACAAGTTTGGCGGTTCCTCTGAGTCTGGAATCAACAAAGATGACTCCGTCTCACCCCTCCTGGGGAAAGCCAAAGCCTTCTGGAGCTCCACAGAGAAGCAGGACACTTCTGCACCTTCGGTCCCCACTAGTAGAGGGCCTGTCCCTTTCACAAAGACCCCAAGCCCAGAGCCTGAGGTCCCTAAAACCACCCCACGGGTTGTAGCCTCTGACCCACCTGCAGCCAAGGCAACACCTAAGGCCTCTGAACCTGTAGCCAAGATGACACCTAAGGAAACATGCAAAGATGTTGAGGTAACAAAGGACGTCTCACAGGAAGCAGAGGGCAAGGCCCCAGTTCCAGTTTCAGAGACGCctgtgcagcagcagcagcctatgAAATTCAACACTGGTATTCTCCAAGATCAGAAAAGAAACCTTTCTTTCCTCAAGCCGTCCAGGAGAACATCCAGTCAGTACGTAGCTTCAGCCATTGCTAAATACGCTGTGAAGCCCACCATGGCCAAAGCTGACAACATCCAAGAAGTAACAGCAAAGTTGTCTGACCCCATGAGAAAGCCACCTGGCAGTTACAGCTATCAGAAAGAGGGTCGATCCTTTCATGTAAATCCACAGCGGTCCTCTGGTACATCTACTACAGTGAAGAAGGAGAGCAGCTCTGGGTCTGGATCCTATCACGCCGGTGCTAAATGTTACCCTGACTACCTCTCAGCGGAGAAACAGGTAGTCTCTGGTGAGTCGACGCAAGGAGTGGACCGGAGTGGTTATAGGAGCAGTTCTACCCTGCGAGGTGGAGGAGGGAGCTCCAAGTCACTGGACTCTGATACAGTGGCCAATAACAATAAGCAGCATGGGTCCAACAGTCCCAGTCCCAGACAGCAGACACCGATTACAcctccaccaccagcaccacAATCCACCACTAAACAGGTGCCTGCCATCTCCAAGCCCTCGCAGGGTCCACCACCTGCACAGagcagatcagagacagtaggtcCAAAAGGTAATCCAGCCCTGGCAAAGAAGCCTGAACCACCGCGATTGGCTGCAGCTGCTGCCAGCAACGACCTCCCAGAGCCCCAGCAGGTCAGTCTGTTTGGGCCGGTGAAGAAGTTCAAGCCTGTGATCATGAAGTCGGTCCAGATGGACACGTCGCTACACACCACTCTGATGTCGGCCATCCAGTGTGGGGATGGGAAGGAGAGGCTCAGAAAGATATCGGACTCAAGTGCAAGCAGCACTTTGAAGAAATCGTCCTTTGTTGAGGAAGAGAATGAGCGATGTGCGCTACTGGCAGCCATTAGAGGCCAACGTAACTCTGCAGGGCTAAGGAAGACCATATCCCAGGCTGCAGAGGAGCTTGACAAGTTCAGGAAGACtgaggaggagaacagagctCTGTGTGATGCCTTCCCTGCCatgcctccccctcctccatttGTGCCTCCGccacctccacccccctctatgctccctcctcctcctgcccctccCTCCACTCAGCCCAAGCCCACTATGATGGGGCAGCCCCCGGGGGCTGGGGGGAATCCCGCTCTGGCCCGGGATGCAATGCTGGAGGCCATCCGATCTGGCTCTGCAGCTGAGCGCCTGAAGAAGGTCAATGCCCCCACAAAAACAGTCCAAGTGAACGGTAGACTTGGTACTATACAAGCAGCATCATCGCTCTCACAAGGACAATAAAGAATCTTCCAGAATGATTCCAGAACATCTTGCAGTCTGATTAGAATCATCATAGGCAGCCAAATAATATATGTTATCTTTCACCTTAATTTATCATTGTCCTTATGTATATGTATCCAGTTATTTGTACTTGAATAGTTGCAATAATTGGAAAGATGAATCGATGTACAAAAGCATGTGCCAATAATTTTTGTTGCTTTGGAATATTTATTAGCTGCTCTTGCTGATGATAATAATCTTAGGAAATAATTTttgttcttttattttttttaactttttaATACTTGTCCACATGGAATTGATGCCTCATGCTGTCTTACTGTCAGTGTTATATTTGattattacatattatatattcCATGTTGTAGGATGCAGTGGATCAGACTCCTTGATATAGTGCAATGAGTAACACCGGCCAAGGATGACAAAATTTGGCTCCAAGGGACTCTCCTCTCCAGGTGGTGGGTGATTAGGTATGTATCCtaaatagtacactacttttgaccaaagccctatgggccctggacaaaagtagtgcactatataaggaatagggtaccatttcgaATGCATTCTAGTTTATTTTGCAAAGCTCTGGGTATTTAGATCTTGTCTATGCTGTTGTTCAACCTTTACATGTTTTTATTCTTTGATTTATAATGCCtcttaatatatttattttaatctTCAGAGAAAAGATTACTAACATATCCTTTCTTGACATTACAAAATAATTTTTGAAGCATTTCTGTTTGTGTAACTATTGGTGAATAATATCACCATGACTTAGTAAAATAGTTTACTAATCAATAGATATATGAGTAACGAACAAGAGGTATGGGCTTTTATTCCATTTTCAGGAAAAAAGTCTGACTATTTGCTAtgattttattgtttatttaatcaCAAAGTGTTCTATGTTGTTTGCATGGGGCTCCAATGCAcagctttttgttgttgtattcaaCAGTAGATCAGATGTGCAGTACTGTACATGAGCTTGTCTCTCTAGATGTTTTATGGCATTACTATGGCATTACTATTGTAGTTGAAAGAAAGCAAAAGTGAATATTATAATATTTTATAAAGGAAGTACTATCAATATTGATCAGAATGACTGAATGATAGACTTAAAGAGCCAACCAGTGTAAAGCATGAAAATAGGGACCACAGGATTCTAGACTGGTCTGTCAAAAGATGGATTCATAGGTTGTCCAGCTCCTTAAAATTCAGTTTAGATGTTTACTTATGTTCTAgatcaggggtattcaactcttaccctacgaggtctggaGACTGCTGGTTTTCTGTGTTACCTGATAATGAactcccaggtctaaatcagtcactGATTAGAGAGGAACAATGGAAAAAAACAAAGGAACTGTCTTTGAGGTCCTGAGTTGAGTTTGAGGCTAGAATGTTGTATATTTTGTAAACTACAGATCAATTATTAcattaataaactgttgttaaAATTGGAAATTCAACAGAATAATATGAATCCAATAAAATTGAGTTTTATAAGCTGTTGCTTTTTTGTGTTTTTGGAAGAATTTCACATTTTATTTGATCTgcaattttttcttttttttcaataAATGATTTTTGTAACCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265875 lncRNA upstream 130290 20111139 ~ 20147888 (+) True G232545
TU265850 lncRNA upstream 197688 20078644 ~ 20080490 (+) True G232520
TU265778 lncRNA upstream 311682 19965733 ~ 19966496 (+) True G232448
TU265646 lncRNA upstream 372643 19898442 ~ 19905535 (+) False G232341
TU266014 lncRNA downstream 47783 20393812 ~ 20466345 (+) True G232673
TU266037 lncRNA downstream 115249 20461278 ~ 20463342 (+) True LOC110512870
TU266061 lncRNA downstream 135677 20481706 ~ 20481949 (+) True G232719
TU266070 lncRNA downstream 144897 20490926 ~ 20496169 (+) True LOC110512886
TU266075 lncRNA downstream 159997 20506026 ~ 20506658 (+) True G232733
XM_036971423.1 mRNA upstream 45762 20092081 ~ 20232416 (+) False LOC110512678
XM_036971436.1 mRNA upstream 45762 20092081 ~ 20232416 (+) False LOC110512678
XM_036971428.1 mRNA upstream 45762 20130594 ~ 20232416 (+) False LOC110512678
XM_036971437.1 mRNA upstream 45762 20148734 ~ 20232416 (+) True LOC110512678
XM_036971442.1 mRNA upstream 52539 20092075 ~ 20225639 (+) False LOC110512678
XM_021592972.2 mRNA downstream 8388 20354417 ~ 20440018 (+) False LOC110512801
XM_021592974.2 mRNA downstream 8388 20354417 ~ 20440018 (+) False LOC110512801
XM_021592984.2 mRNA downstream 35112 20381141 ~ 20440018 (+) False LOC110512801
XM_036971548.1 mRNA downstream 35112 20381141 ~ 20440018 (+) False LOC110512801
XM_021592978.2 mRNA downstream 35114 20381143 ~ 20440018 (+) False LOC110512801
TU265650 other upstream 433526 19827130 ~ 19844652 (+) True LOC110512505
TU265246 other upstream 1043883 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 1426196 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 1691337 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 1982073 18295354 ~ 18296105 (+) True G230916
TU266948 other downstream 212747 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 262264 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 918046 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 940697 21286726 ~ 21287002 (+) True G234340
TU268500 other downstream 1671565 22017594 ~ 22019984 (+) True kiaa0319

Expression Profile