RNA id: XM_021592997.2


Basic Information

Item Value
RNA id XM_021592997.2
length 6291
RNA type mRNA
GC content 0.42
exon number 17
gene id LOC110512801
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20354417 ~ 20440018 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTTGCACCATCTATCAAAAGTGAATGGGAAAACCCGAAGAACAGAGATTGAGAAATAGCTCCATAGCATGGCTGTAGCCGGATGTCCAGATTATTTTCTACACCATCCAAATTATCAGTAACATTGAGCGTTTACTTGAGCCTGGCTGCAGGGCCAGTTGGGCGGGGTTTTCACTTTTGACAATGTAGACCGAGCCTCCAATCACAGACCAGCAGATCTAATTGGGCCGAGTTTCCAGAAGTCAACCAATCGGAACTCTCCAAACCATCAAGAAGATGATGTGGACCTGGAGGCGCTGGTGAATGACATGAACTCCTCGTTCGAGAGCCTGTACTCCACATGCAGCAGCGTGCAGTCTGAGTCGGTTCCCCTCCTGCAGCACAACGGCCAGGTGCATGTGCACCGCAACCACCACCGCAGTGCCCCCATGCCCCCCCACACCCACACCTCCGCCAGCGAGCTGCAGCACAGCCCCACCTCCCCCAAACAGAGACTCCGACGCTCCCAGCCCATGCACATCCTCGCCGTCAGGAGACTGCAGGAAGAGGAGCAGCAGCTCCGGACGTCCTCTCTGCCAGCCATCCCCAACCCCTTTCCCGAGCTCTCCGGCTCTCCTGTCCTCAGCCCTGGGTCCTTACCTCCGTGTCAGCCCTCAGGCACATACATTATAAACATTTTCAGCGAGGACGGCATGGGGAAAGTAGTGGAAATACCAGCCGACATGACTGCAAGAGATCTTTGCCAGCTCCTCGTGTACAAAAGCCATTGTGTGGATGACAACAGTTGGGCACTTGTTGAGCATCACCCTCTCCTCGGACTAGagAGGTGCTTGGAGGACCATGAGCTAGTGGTACAAGTGCAGGCATCCATGACCAGCGAGGGCAGATTTCTGTTCAGGAAGAACTATGCCAAATATGAATTCTTCAGAAATCCCCTGAATTTCTTTCCCGAGCATATGGTTGCATGGTGCCAGGAAACAAATGGTGCAATCCCACCATCTCAACTTTTACAGaaTTTCTTGAACTCCAACAGTTGTCCTGAGATCCAGGGCTTTTTATATGTGAAAGAGATGGGCAGGAAATCCTGGAAGAAGCTATACGTGTTCCTTAGACGCTCAGGACTTTACTTTTCTACAAAAGGAACGTCAAAGGAGCCCAGGCATTTACAGTTACTAGCAGACCTGGAGGACAGCAATGTCTTCACAGTAACAACAGGCAAGAAGCTACACAGTGCGCCGACAGACTACGAGTTCTGTATAAAGCCAAACAAGAGGACTGAGCTGAAAGAGTTGAGGATGTTGTGTACTGAAGACGAACAGAGCAGAACGTCCTGGATGACAGCCTTCAGACTCTTCAAGTATGGAATAGTCCTCTATCAGAACTACAAGATTCCTCAGCAGAGAAAAACTCTGTCACACTTTTCAACACCAGTGCGGAGTGTGTCTGAGAATTCTCTGGTTGCCATGGATTTCTCAGGAAGGATAGGCAGGGTGATCGACAATCCCTTGGAGGCCCAGAGCGCTGCCATGGAGGAGGGTTATGCCTGGAGGAAGAGAAGTCAACGGATGAACATTCTAGGTAGTCCCAGTCCACTACATCCCTGTTTATTAAGCTCAGTTATTCACAGAACACAGCTGTGGTTCCATGGGCGGATAACGCGAGAAGAGTCCCATCGGATGATCCACCAACAAGGCCAGGTGGACGGGTTGTTTCTGTTGAGGGACAGTCAAAGCAACCCAAAGGCCTTTGTCCTCACACTGTGCCATCACCAGAAAATCAAGCATTTCCAGATCTTACCGTGTGAAGAGGACGGCCAGATCTTCTTCAGCCTTGACGACGGGTCCACCAAATTCACCGACCTGATCCAGCTGGTGGAGTTCTACCAGCTCAACAGAGGAGTCCTGCCTTGTAAACTCAAGCACCCCTGCACCCTCGTAGCCTTATGACCCCTGACCTATGACTTGACCGGACTCTGCCTAAAAACAAACTCAAGACTTTTACTTTAGGAGAAGCTAAAGTGATGAACTCCTGTTGTTCTTGATGTGTCATGAGCTGCCAGAGACTGCGGATGGAACAGGACGGAGTGGTTGGGGGGTTAGGACGGACGCCAGTGGACTTCAGTGACCTCTGTGTTTCGGAAGGAAGGAGGAGATAAAGAAGCAAAAATAAAAGCAAAAAGCTGCACCACGTTGTTATTAActcttgtaaaaaacaaaaacattttcaagTGTGTATTCATAGTCACCAATAAGCTCTGATCCACTGACACTGTTTAGTGACAGTTTATGAGATCAAATTAGTTTTTATTTTCCTTGTACAATCATCAGGACTTTGTTTAGTCTGGGCCACTTTTTTACATAATGAAAGTATTTTTTTTGTTACAAATCATCTATACTACAACCTGTTTTTGAAAAGCTGATTGTTTTCTAGTTTGGCGCTTGTGAAACTGGGAACAGACCTTTCCACACTGACTGAAGAAGAATTCCTCTACTGTCTCATTCTTCTCGTTACCAACAATGGCAAATCCCTCCTGtgttggagggatggatggacaaTCTGATATTCGTAAAAAGAACATCACGAGACAGATCACGAGGCCAGCTGTCTCTGTCAAGCTGTAGGAAAGGAAAGGCTGGAGCTGGTAACTTAGGATGGAGCTGAAGGATACTCAAGGACTACACAGGATCCATTCATTCCACTCTCATAGGACTTTTcttcatttctttctttctttctttctttggtgACCTCACAGGCGTTTGTATTCATGACATTTTAGTACTGCATCAAATGTGTTCTTAGTCCGTTTTAGTTTCTTATCAGTAGTCTGGAGCGTATAGATTTCTAACAGTCACACAACAACAACTCAATCACTACATCCAGTTCAGTGTTAAATCAATCCATCATCAGCTTCACCATCCGGTGTTCCACATGAACTTCCCCCCAAAATATAAACTACTACAGGTATTCATTCACTCCCCGTCTCATCCACTCATTTAAGTCCATAGATAGCTGTTGAGGTCCACGCTGCTAGCCTAGTCCTATACCGTGTGCTATAACCAACCCTTCTATTGTTGGCTACAGTACGTATTCAGAATGACACTAGGCTACCATGCTGCTCTTCAGGTgataacaagcaacataacagcTCTGCTCTTGGGTCTCTCTTGGTGTCAACACAATAATAAAGCTATATGTAAAACATTGGAAAGCATATGGCCATCTTGTGGACTGTAATTCCATGTTGTAAGCACTCTGAAGACATGGTTATGATTATATGAGTAAAATCTAACAGGCCACTGGGGCGGGAGGGTGCCACAGTTTTCTTTTAAACCCACCTGTTTGCATTCCCTCCGTCAGAACACAGGGAAATATAACCACTACATCAAGCTCTTGTGATCCACTAGAGGGATCTGACTAGCTCAGAGTTGACGTGTACAGTCCAAGgtcggtctggtctgtctgttgtgcTGTCTGTAGAATGCAACTGGAATCAATCGACTCATCTGCTACAAGGACCCATCTTCTTAATCcaagggtgcatcccaaatggcaccgtattccctacatagtgcattaccttacttttgactagggcccgtaaggctttggtcaaaagtagtgcactatatcggaaatagagtgccatttgggattcacccCAAGTCTATTAATTTTAGACTTGTTGCTTTTCTTTTCCATGATGTGATTGAATGATTGTTTTTAGAACAGACACTGTGAAGCCCTAGTAATGGATAATACCCTGAAGTGGAAGGGTTTTTACTGTCCAGCCTCGTCCAAGGTTGCAGTGAACACACAGATTTGTAAAGATGTTTTTACCTGTAACGCAACATTAAGAAAGAGCCATCTTTTTATTTATAGTGTCTTAAGCTGGATAGATTCAGATACAGAATATTAGCCACACGATCTACAAGTTCTGCACAATGACATTTCAAAAAATAAGATGCAATGACTCAATCATTTCAAGTATTGTTATGCAAATTTATTTATATACCTGGATGTGAGTGATTACTTGAAATGTAGCTCTTTTCTCAGTGCTGTTCGTTACTGTTTTATCATTACCATGGAATGATTGAACCGCGTAATTATTACAAAGCATCTATTACAAAGCCTATAATTTTTTTATGTTTGAACACTCAAACTATTTTATCACCAACACTTACTATGAAGTAACATTCAAGTGGTGTTCCCTAATGTCATGGTTTTCATTCCAAATTGGTGTCAGTAGAAAAAGTGTGGGGAATAAAAGTCACTAATATTTCAGTCACAGTGCGTTTCACATCGATATTCAGTTTAATGCCTTTCTCTCACACATTCTTCTACATTTAGGAAATCTTTTCACATGAACCCCTCAAGAATATTTCAAACACAGGTTGAAGaagattacatgtatttttttttttacatatttcaaCATTTAACATCTTCTTAAGTGTGACTTTCACTGATAATGTCAATCAAATTCATTTCATATCTAGATATTTAATTCATGAGTTGATTTTCAAATACACACTGTTTTTTGAGCTGTCAGTTCAGTTGCTCTGTCCCATTTCATTACAGTTAGTTGTCTTCCATTTTACAGAACTTTCACTCTTTAAACTTTGCGTTAATCAGAACTTTGTTTCTTGTGTCAGAAGTGAAGCTATACCTTTACAATACTTGAGCCACAATTGCAAAAAAGGAATTGGTGTACAGTACGTTAAATGGCCAAGTATTTTCCACAGCGTAGTGTGTATTATCCAATTAGAAAGGCTTGGATGTGATGGCACCACTAGATGCCCACTGCAGTACCCTTTTCTATAGAATTTTGAGAGTAACTTCAGAGCTACACTTCACTGTTTATTGGGTGTGACCAGAGCCAtgaatatataatatatgttaaTGTATGGCTCTGGGTGTGGAATCATTATGACTATACAATGAGCAGGTTAGGTGCCAAAGCTGCTTACTTCTCCTTTGCTAAATTCGGTCAAAACGTCGGACAATATAGCTTCCCATTGGTCATAATGATTTCAGTAGAAATCAGTTAGAATTGCCTCCTCCGGTGGTAATCTTAGCTGTACAATGCAATATGCAACTCATGTAAAAGTTGTGTATTGAATCAATGTACCATATTAGCATATGAAACCATGTAGATGCAACACTGTATTTAGGTTACAGATCACTATTATTACCGCATTGGCTTACTCTTAACTACTTATGAAATGAAGAAACTTGATTTATTTTTATCATTTGGTTTAATGTGCATATCGAGTTTATTTCTTAAATGTTTGTCATGTAAAAACCTCTTCACAAATGTCTGTAATATTGAAATGTTGCTGGTATGGAACTGGAGTTGGCTTGGGCATACGGTGTACATCTTTTCATAGTTCCTGCAAGTCATCCTAAGCTACTCAGACATCACTGACTTCTCAACACTAACTGTTTAGGCCTGTTAGATACAGATAGGTGTTTTTTGTATTCAGAGGCGAGTTCTCTCACATAGTGTCTTGCTATGAACTAGAATGTTACTAGTGACATTGAATCACCTGCAAAGTAGTGAACTGATGAAAGTGAATTAAGTAAATGTACTTTTTTATATTTCAGAGAAATGAATGTAACTGGGTTGCTCAGGGTTGACATGGAGCCTGTTGAAAACTGGTCATATCGTCAGACCAGTGAGATTTTGTATGTGCGATGTTGTGTAGTTCTGTTGATCAACTTGGGGTTAATAGTATTTCACCAAATCATTTTTTCTTTAGTAAGTAGTTTGGCCTTTATGATGTTCGGCCTTTATGATGTTCTTTCAGAATACCAGTAGTTTCTCCCAAACAGTAGTACAGCACAGGTGTCCTCGTTTCTCTTGTGTAAGTCTGTTTGTCCCAAGAAGCCTAAAATGCAGCAGGTGCCTCTGATGACCTTTTTCTCTGCACTAAACCAGAGCTGACTTTGGACCGTTCATGGGAACCTTTTCCAGTGATCGAAAATGACTCTTGTGCTTTGCATATATTGTCACAATGCAAGATACAGTGACTGTACAAAGGAGTAAAGCAaatatatatagatctatataaaTATAAACCATTATGTATTTCAGGGAATGCAAAAAAACAAGAACCTGTATCTCTTTTTAAGAGAAAGATCCTGTATTCATACTGTGCTTTGCTTCGATCTGTAAATAGCTGAATGGCTTATCTCTTAATTGTAACCTTTTCAGGTATTTTTGTACAAATAAGGGACTGTTATGTTCTGTTTATTGTAATTAGAATAAAACATTAATACATTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265875 lncRNA upstream 233255 20111139 ~ 20147888 (+) True G232545
TU265850 lncRNA upstream 300653 20078644 ~ 20080490 (+) True G232520
TU265778 lncRNA upstream 414647 19965733 ~ 19966496 (+) True G232448
TU265646 lncRNA upstream 475608 19898442 ~ 19905535 (+) False G232341
TU266037 lncRNA downstream 21260 20461278 ~ 20463342 (+) True LOC110512870
TU266061 lncRNA downstream 41688 20481706 ~ 20481949 (+) True G232719
TU266070 lncRNA downstream 50908 20490926 ~ 20496169 (+) True LOC110512886
TU266075 lncRNA downstream 66008 20506026 ~ 20506658 (+) True G232733
TU266928 lncRNA downstream 108388 20548406 ~ 20548665 (+) True G233507
XM_036971487.1 mRNA upstream 35114 20278178 ~ 20346029 (+) False LOC110512735
XM_036971570.1 mRNA downstream 6651 20446669 ~ 20471212 (+) False LOC110512870
XM_036971566.1 mRNA downstream 10724 20450742 ~ 20473526 (+) False LOC110512870
XM_021593004.2 mRNA downstream 50850 20490868 ~ 20508431 (+) False LOC110512886
XM_021593011.2 mRNA downstream 69274 20509292 ~ 20531339 (+) True LOC110512899
XM_021593029.2 mRNA downstream 165147 20605165 ~ 20622065 (+) True tbrg4
TU265650 other upstream 536491 19827130 ~ 19844652 (+) True LOC110512505
TU265246 other upstream 1146848 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 1529161 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 1794302 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 2085038 18295354 ~ 18296105 (+) True G230916
TU266948 other downstream 118758 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 168275 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 824057 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 846708 21286726 ~ 21287002 (+) True G234340
TU268500 other downstream 1577576 22017594 ~ 22019984 (+) True kiaa0319

Expression Profile