RNA id: TCONS_00028779


Basic Information

Item Value
RNA id TCONS_00028779
length 2220
RNA type mRNA
GC content 0.55
exon number 11
gene id XLOC_014549
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 8582685 ~ 8604429 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGAGTATGGAGCAGGAGCTGCAGTGTCCCGTCTGCAAGGACATTGTCAAGCAGCCCATTGTACTTCCGTGTCTGCACAGCGTGTGCCTGATGTGTGCCTCAGAGGTGCTGATTCAAAGCGGGTATCCTCAACCCGAGCTCCCGCCGGAGCCCAACTCACCCGCTTCCACCCCAAACATGCGCTCACCAAGACAGATGCGCAGACCCATGCCTAAATCTGACCGCGTGGACCGCCTGTTGCGCTCAGGCTCTGGGACATACCCGGGTCGCAGGCGAAAGGACGGCCCCCCACCTCTTATGCTGTTTCCTTGCGCCCCCTGTGGGCGAGATGTAGAACTAGGTGAGAGAGGACTGGCTGAGTGCATGAGAAACCTGGCACTGGAGAGGATTGTGGAAAGGTATAGACACACAGTGAGTCTGGGCAGTGTGGCAGTGATGTGTCAGTTTTGTAAACCCCCACAGGCCCTGGAGGCCACTAAAGGCTGCGCAGACTGCAGAGCCAGCTTCTGCAATGAGTGCTTCAAACTCTACCACCCCTGGGGCACTCCTCGAGCCCAGCACGAACATGTTCAGCCCACACTCAACTTCAGGCCAAAGGTGCTGACATGCCCAGAACACGATCAGGAGAGGCTGCAGTATTACTGTAAGTCATGTCAGATGCTTCTCTGCTCTCTCTGTAAACTGCGTCGAGTCCATGCGGGTCACAAAATTGCACCCGTCACCCAAGCCTACCAGACTCTCAAGGACAAGATCACCAAGGAGCTGAACTACATCCTGTCCAATCAGGACATGGTGTTGACTCAGATCACACAACTGGAGAGCGCTGTCACTCAAACTGAGGTGAACAGCGTATCGGCCAAAGAGCAGCTCTCTCACTGTGTGAAGGAGATAATGGCGCTGCTAACCGAGAGGCAGACAATGCTGGCGCAGGCTCTGGAAGGTTCACGGCAGAGAAGGGCAGATGCTTTGTCCAGTCAGGTGGCCGAAAAACGCAGCCTGCTGGAGCATGCTGGACTGATGGCTTTCACCCAAGAGCTGCTCAAAGAAAATGACCCATCGAGCTTTGTTCACGCAGCTAGAATAACACACAACAGATTGGCCCAGTCTATTGAATCTATGCAGCATTTTGCTCTCTCTGCCGATCCCTCGTTTCGTCACTTCCAGCTTGATATTTCCAGAGAGCTCAAACTCCTCACTGACCTGAACTTCATTCAGGCCCCTTTCGCACCTGTAATTGACACCCAGCGGACCCTCGCCTATGACCAGCTCTTCCTGTGCTGGCGGTTGCCCCAAGACTCCACTCCAGcctggcatttctctgtggaatTTCGCCGACGAGGGGTAGTGCCAGGGGGCGGGGCAAGAGGGGGTATTCGCGGGGGATTGGCTGCCGCTCGCTGGGGCTGGCAGAGATTGGAGGAGGTAACCGGGACCTGCGCTGTGATTGACAGGCTGGAGATGGACAGTGTGTATGTGCTCAGAGTGAGAGGCTGCAATAAGGCCGGCTTTGGAGAATACAGCGAggaagtatatttacacacaccaCCAGCTCCAGttttgaatttttacctGGACTCTCGCTGGGGTCTGCACGCGGACAGACTGGTGGTGAGTAAGGAGCAGCGATGCGCCCGCAGTGTGCCCGGTCTGTCTCTGCTGCAGGCCGCTGATCGGGCACTGACCTCCTGCCACCTGACAGCGGATCTGCTGGTTGGCGTAGGCCTGGAGTCAAAACTTCAAGAGTGGTTTCATCTTCCTCAAGACATGGCAAGTCCAAGATTTGATCCAGACAGCGGTCATGACAGTGGAGCTGAAGATTCATCAGATTCTCCTCCCCCTTTTGCTTTCCTCACAATGGGCATGGGAAAGATCTACCTGCCTTCTTCTGTCAACTCCCATCACTGCAACGCTAATTACAGAGAGTCTGGCTTCACTAATGGCAACGGCCCTTCCTCGCCAACCGGCGTCACTTATCCGTTGCCACCGAGACTAGGAGTGTGTCTCGACTTTGAGAAGGGGCGTGTCACATTTTACGATGCCCATTCGCTCCGCCCACTATGGGAGGGGCCTGTGGACTGCTCCGCCCCAGTGTGCCCTGCGTTCTGTTTCATCGGAGGCGGGGCTCTGCAGCTACAGGAGCTGGTAGCCAATCGTAACGCAAATCAAACCCCTGTGAGACGAGTCACCATACAATCACGTGTCACAAAACTGAACTGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-466 Predicted to enable zinc ion binding activity. Orthologous to human TRIM46 (tripartite motif containing 46).

Ensembl:

ensembl_id ENSDART00000081546

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030157 lncRNA downstream 459476 8121929 ~ 8123442 (-) True XLOC_014547
TCONS_00030156 lncRNA downstream 577868 7987661 ~ 8005050 (-) True XLOC_014545
TCONS_00030155 lncRNA downstream 660355 7883547 ~ 7922563 (-) True XLOC_014544
TCONS_00030154 lncRNA downstream 770353 7801430 ~ 7812565 (-) True XLOC_014541
TCONS_00028769 lncRNA downstream 1006814 7574567 ~ 7576104 (-) True XLOC_014537
TCONS_00030158 lncRNA upstream 47150 8647533 ~ 8648772 (-) False XLOC_014550
TCONS_00030159 lncRNA upstream 47150 8647533 ~ 8653122 (-) True XLOC_014550
TCONS_00030160 lncRNA upstream 48741 8649124 ~ 8663238 (-) True XLOC_014551
TCONS_00028781 lncRNA upstream 99371 8699754 ~ 8702063 (-) True XLOC_014552
TCONS_00030161 lncRNA upstream 160382 8760765 ~ 8762375 (-) False XLOC_014554
TCONS_00028776 mRNA downstream 46444 8533989 ~ 8536474 (-) False XLOC_014548
TCONS_00028777 mRNA downstream 47933 8534297 ~ 8534985 (-) True XLOC_014548
TCONS_00028775 mRNA downstream 485934 8086491 ~ 8096984 (-) True XLOC_014546
TCONS_00028772 mRNA downstream 750479 7819480 ~ 7832439 (-) False XLOC_014542
TCONS_00028773 mRNA downstream 750479 7819932 ~ 7832439 (-) True XLOC_014542
TCONS_00028780 mRNA upstream 80197 8680580 ~ 8732037 (-) False XLOC_014552
TCONS_00028782 mRNA upstream 142877 8743260 ~ 8748571 (-) True XLOC_014553
TCONS_00028783 mRNA upstream 157953 8758336 ~ 8812963 (-) False XLOC_014554
TCONS_00028784 mRNA upstream 160412 8760795 ~ 8768564 (-) False XLOC_014554
TCONS_00028785 mRNA upstream 174674 8775057 ~ 8812956 (-) False XLOC_014554
TCONS_00028774 other downstream 757385 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028762 other downstream 1114602 7468201 ~ 7468316 (-) True XLOC_014531
TCONS_00028751 other downstream 1305325 7276060 ~ 7277593 (-) False XLOC_014526
TCONS_00028719 other downstream 2343929 6232164 ~ 6238989 (-) True XLOC_014509
TCONS_00028709 other downstream 2739713 5843091 ~ 5843205 (-) True XLOC_014503
TCONS_00028791 other upstream 252157 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028818 other upstream 1412115 10012498 ~ 10012614 (-) True XLOC_014580
TCONS_00028819 other upstream 1522850 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028825 other upstream 1638070 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028853 other upstream 2035986 10636369 ~ 10646822 (-) False XLOC_014597

Expression Profile

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