RNA id: XR_005039838.1


Basic Information

Item Value
RNA id XR_005039838.1
length 645
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC118944500
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20552753 ~ 20554867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggtaCTTTAACGCACGCacatattcatcactcctccctgctccGTTATAAGATAagttaacaatgttggtcgacacacaaattaacttctgtctTAGTACATACATTTCACACTTGTCAGTGTTCATATTTAATATAAGCAATATTTATTATACTTATatatgttgtggatgagcgcattgtttgttctgttcctctctctctgtagcttccgggtatgctggataaggacccgagctaagggaattgggCTGACTTTGTAGTGCCTGTCCCGAATGGTTCATTCATGTAAATGGGCATATTGAAAGACACTGTCACTGTCAGTAGTGATGTATTGTTGTAAATGTTATTTTGGGATATTGTTTCATAAAAAAcgtgttgcaatgtatatcctttagtatgtttagttaatggaaaatgtaggtttgacTAGGTAATCGCTTAATTAATTTgtgttaattgttctgaggggaggggctagccctacaaaaggagcctctctttcagttcaTGGAGAGgcattttggattgagctgtggatggggTAGCATTGTTtttagctgtcccataaggtatatgtttgatggcagtactgttgtttttgttcCGGAATCAATTTGTAAATAAACACGCTGAAGCACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266935 lncRNA downstream 303 20552215 ~ 20552450 (-) True G233514
TU266912 lncRNA downstream 19257 20529880 ~ 20533496 (-) True G233491
TU266895 lncRNA downstream 44388 20506750 ~ 20508365 (-) True G233479
TU266894 lncRNA downstream 47127 20505226 ~ 20505626 (-) True G233478
TU266890 lncRNA downstream 51406 20501109 ~ 20501347 (-) True G233474
TU267374 lncRNA upstream 99330 20654197 ~ 20654460 (-) True G233914
TU267377 lncRNA upstream 101334 20656201 ~ 20656503 (-) True G233917
TU267407 lncRNA upstream 147338 20702205 ~ 20709007 (-) True G233942
TU267420 lncRNA upstream 174955 20729822 ~ 20730058 (-) True G233955
TU267422 lncRNA upstream 177111 20731978 ~ 20732335 (-) True G233957
XM_021592921.2 mRNA downstream 277445 20272374 ~ 20275308 (-) True LOC110512719
XM_021592920.2 mRNA downstream 282381 20262526 ~ 20270372 (-) True LOC110512703
XM_036971419.1 mRNA downstream 462056 20023910 ~ 20090697 (-) True dnah5
XM_021592906.2 mRNA downstream 534251 20014592 ~ 20018502 (-) False LOC110512652
XM_036963613.1 mRNA downstream 621013 19914520 ~ 19931740 (-) False g6f-like-b
XM_021593013.2 mRNA upstream 8781 20563648 ~ 20581532 (-) True LOC110512912
trnat-ugu-31 mRNA upstream 28413 20583280 ~ 20583352 (-) True trnat-ugu-31
XR_002471931.2 mRNA upstream 35579 20590446 ~ 20595555 (-) False LOC110512925
trnat-ugu-32 mRNA upstream 37189 20592056 ~ 20592128 (-) True trnat-ugu-32
XR_005041371.1 mRNA upstream 38335 20593202 ~ 20595555 (-) True LOC110512925
TU266934 other downstream 756 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 796135 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 904124 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 953652 19542102 ~ 19599101 (-) False rims2a
TU265301 other downstream 1270615 19159300 ~ 19282138 (-) True LOC110511176
TU267325 other upstream 93904 20648771 ~ 20651696 (-) True glipr2l
TU267728 other upstream 623730 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 623730 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 890621 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 914794 21469661 ~ 21469945 (-) True G234600

Expression Profile