RNA id: XR_002471931.2


Basic Information

Item Value
RNA id XR_002471931.2
length 1188
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110512925
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20590446 ~ 20595555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCACATTTTATTTTGTGTGTAGGCCTAGTGTGTACATGGATATTTGCATAATGTATGCATACAGAGCAGGCTCTATTTCTTTCAACCATCTCCAGGTGTATGTAGACAATTTGCGGTGATGGGGTGCCTCGAGTGTTGACTGGCGTTTAACTGTTCTGATGGTAGCGCATTTGGGATATTGTAATCTATCGAGAAATACGAGTTAGCAGCCACCAGAATCACACCTTGAAAGTTTTATAGTTGCCTGCGAAAGACTTGCCTTTCTGGCTCGGTGGAACAGCGTTTATCAGTCCTCTGCGCACCCCCAAGTCTTATTTGCTGTGGATGGACCCCCATCTAGCGGACAACATGAGTACTGCACAAGCGGACGTGAAAGAAGACTGTTAAAAAAATCAAAGATGGCGACTTGATTGTAGCACAAATGTCTTTAGTTCATAACCCTCTTGTTGtacgtccaaccgacctcacaaccgcagaccacgtgtaaccacgccaggcatcttcacctgtgggatcgtctgagaccagccacccggacagctgatggaaATGTGGGTTTGCAGAACCAAAGAATTTCTACACAAACTgtcatcatcctcaccagggtcttaacctgactgcagcttggcgtcgtaactgacttcagtgggcaaatgctcacctttgatagccactggcacactggtatctgtgaccaacagatgcatatctttattcccagtcatgtgaaatccatagattaggtccaaatgaatttatttcaattgattttattcaattgatttccttatatgaactgtaaaactcagtaacatttttgaaattgttgcattttatatttttttggtgTGGGTGTCAGTATAAACGCAGCCACTCTGTTTTATTTAGAGATTGAGCATGATTAATGCAAATGTAATGTCCCCTAACCCCCTGTCAGTAGGGTGCAAACTGTGATTAATGAAATGCCAAAGGAAATATGGAGCTGTGAGGAGAGCAGAGCAATGCAGTATGTTGAAATGTTTTCTAATATAAACATTCTCTATGCAATTTGTGATATGTGTATATAGCTTGTCCTGAAAAACAAAGTAGTTTGCACATGAGTGAATTGTAACTAGTGGTCTATGCAAGATAAACATAATACTAGAGAAAATTATAAATGTTCCATACTTTGGTCTCCATAAAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266935 lncRNA downstream 37996 20552215 ~ 20552450 (-) True G233514
TU266912 lncRNA downstream 56950 20529880 ~ 20533496 (-) True G233491
TU266895 lncRNA downstream 82081 20506750 ~ 20508365 (-) True G233479
TU266894 lncRNA downstream 84820 20505226 ~ 20505626 (-) True G233478
TU266890 lncRNA downstream 89099 20501109 ~ 20501347 (-) True G233474
TU267374 lncRNA upstream 58642 20654197 ~ 20654460 (-) True G233914
TU267377 lncRNA upstream 60646 20656201 ~ 20656503 (-) True G233917
TU267407 lncRNA upstream 106650 20702205 ~ 20709007 (-) True G233942
TU267420 lncRNA upstream 134267 20729822 ~ 20730058 (-) True G233955
TU267422 lncRNA upstream 136423 20731978 ~ 20732335 (-) True G233957
trnat-ugu-31 mRNA downstream 7094 20583280 ~ 20583352 (-) True trnat-ugu-31
XM_021593013.2 mRNA downstream 8914 20563648 ~ 20581532 (-) True LOC110512912
XR_005039838.1 mRNA downstream 35579 20552753 ~ 20554867 (-) True LOC118944500
XM_021592921.2 mRNA downstream 315138 20272374 ~ 20275308 (-) True LOC110512719
XM_021592920.2 mRNA downstream 320074 20262526 ~ 20270372 (-) True LOC110512703
XM_021593053.2 mRNA upstream 52823 20648378 ~ 20652051 (-) False glipr2l
XR_005041383.1 mRNA upstream 52823 20648378 ~ 20652052 (-) False glipr2l
XM_021593073.2 mRNA upstream 332399 20927954 ~ 20968368 (-) False si:dkey-12j5.1
XM_021593069.2 mRNA upstream 336258 20931813 ~ 20968368 (-) False si:dkey-12j5.1
XM_036971660.1 mRNA upstream 336258 20931813 ~ 20968368 (-) False si:dkey-12j5.1
TU266934 other downstream 38449 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 833828 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 941817 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 991345 19542102 ~ 19599101 (-) False rims2a
TU265301 other downstream 1308308 19159300 ~ 19282138 (-) True LOC110511176
TU267325 other upstream 53216 20648771 ~ 20651696 (-) True glipr2l
TU267728 other upstream 583042 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 583042 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 849933 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 874106 21469661 ~ 21469945 (-) True G234600

Expression Profile