RNA id: XM_021593029.2


Basic Information

Item Value
RNA id XM_021593029.2
length 2851
RNA type mRNA
GC content 0.52
exon number 11
gene id tbrg4
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20605165 ~ 20622065 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcacaacataaacgTTTTCAATATATTAATTCAAGAAAAGTTACGCCttgggagttttattgaagacttGGTTGTTAACTATCTGTCTAATTTTGCATGGGAACGCAATTCAAGGGCAAAATAACTTTACACCATTGTGTGTATCTAATTCTATGGGTTCTGCGCATAAACATCAAGACCAGGTTCTGcaataaaaaaaaagacaatcTAAAGTGCCTTGAAACAAGTGGACCAATCGCAGCTTCGTCCGACAATCATGTGACACTGGTAGCTTTGAGGTCATTTTCTTGCGACTATAGCTGACAGCTCCATGTGAATGTCGCCTTCGTCTTCTACCACTAGCTTTCTATCTTATTTATCAAGGTGTTGGCATGGTGACAGTGGCTGCTGTGTTGTGAATACGTGTCTCGCTTCTCTCTGGCCTTGTGCTGCTCTCTCTGGTCTCGTGCTGCTCTCTGTTTCTCCATGACCAGCCGTCTGCTGGGCCGATGTGCCCGTCTCCTCCCCAGGCCCCCCCAGGCCTCAGCCGCCGCTGCCCTCCTGCCAACCCCTGCAGCTGGGCCAGCAGAGCCACTGTGGGCCCAGGCCTGGCGGCAGCCTGTGTTAAGGGGGCTATGTGAGGGCAGGAGTTTGGTCAATGAGGAGTATCCCATCGAGCCCAAACGCACCCAGCTGGATGAGCTCTTAGAGAGGGCCCAATCTCCACAGGATGTCCTGCAGGCATGGGCGGCACAAGGAGGAAAGGCCAATCAGGCAGCTAAGGCTCTGGTTCAGCTTGTCAGATTGGctgggagagagaaaggtggggcTAAAATGGACCAATTTGAGCTGCTGAATGATCCTAGACTGCTAGACATACTGGACACGGTTACTGCACAGGTAGCGTCGGTCTGGAATGGTACGCTGGTCTCTCTGCTGCGCTCCCTCTCTGCTCTGGGTGTTCCTCCTACAGCTGCAGTACAACGCTCCATCCAGACAGAGGTGCTGTGGCGTGTACGCAGGCTCTCCTACAAACAGCTGGCTTTCTTGGCAGACTGGGGAGCAGGGCGTAAGGGTCAGATGGAGGTGTCGCTGGTGAGTGCAGCGCTAAAACAGCTGGAGCTCCGCTGGACTGAGATCGCTGACTCTAGAACAGTCAGTACCCTGATGGCTAGGGCTGGACACCTCAGTCCTGCACTGATGGACAGACTGGAGGATAAGGCGTTAGAGCTAGCTGAAGGGTTTGGGGCGGAGGATATCCGCAgggtgtctgtgtctctggcGTCTCAGGGACGCCGTTCAGTGCCTCTGCTCAGAGCTCTGTCCTACTACCTCCTACAGAAACCCTCAACAGACCTTTCCACACCGCTACTGTTGGACCTCGCCTACGCATATGggAAGTTGAATTTCCACCATTCCCAGGTCTTCCAGCGATTGGCAGCCGAGTTGTTACCCAGAATGCCAGATATTAGTTCTGCCGATGTCACTCGCTGCGCCAAATCACTAGCCTTCCTCAAGTGGCTCCATCTCCCATTGTTTGAGGCATTCGCTGAGCACTACAGCGTGAACAGTCAGAAGTACAGCACACTGCAGCTTTGTAACCTGCTCATGTCACTGGCCAGGCTCAACTTCCAGCCCAGCAAGGGGGAGGAGTTCTACAAGAAGGTCCACTCTGCCCTGGAGGGTGTTCTCCCTAGCCTGGAGGCGTTCCTGCAGATAGACGTGGtgtggtctctgtgtgtgttacagcaggcCAAGCCCCAGCACATCACAGCCCTCAACCAACACACACATGTTGCCAAACTCTCAGAAGGCAGTCTGTCTCGAGTGGAGAACTATCGCCTGAAGCTCCTCCACATCATTGCTACCCTCCAGTTAGAACACCCAGAGTCTCTGTCCTCCACCCTGCCTACAGAGGCCATGTTGATTCCCTCCACCCTGGGCCGggactcccccctctcccctctacagACTGGGCTGAAGGGGGCCCTGGATAATCTGGTGGGGGGGAAAGCAGAGGCCCTACGTACCGGGGTCAACACTATATACGGCTGGACCATAGATGGAGAGCTGGTGGTGGACAGTGAAAATAAGCCAATGGACCTGGTGACCCTGACAGCCCCTCACCTGCCTGGAGGAGGTGGAACCAATCCCCTACCTGAGGGTGCATGCAGGTTAGCGTTCTTGACCTGGGAGTTTCCTAACTATGGCTCCAGGAGTAAAGATCTGCTGGGACGATTCACCATGATGAGACGGCATCTCAAACTGGCTGGCTTTATCCTTGTAGAGGTGCCATACTATGAGTGGCTGGAGCTCAAGTCTGATTGGCAGAAAGTGGCGTATGTGAAGGATAAGATGGGGAAGGCCATTGCTGAGGAAATGGCGAAGTGAACTAGGCCAAACAGCAGAAGTTTAGAACTGAACCAGACTCAACTGGACTGGAAAGAGGAGAGCCAGGATGTCAAGGACGGCTCACCAAAACCAATCTGGTCTCAAACAACTCTGAAcaacaacccccccacacacacacatacacactaatcAACCCACTTTAAAACAAGCTGATTGGTGGAAAATGTCTTTGTCGTTTTATCTTTGGTTGCCTTGCCGATGCGTGGGGCTTTCCATGTTACCATGGAGACGGCCCTTGAGAGTTCTGTATGCTGAAGAGagcaaacagagagggagaaagagagagtgggctCTATAGCAGAAAGCAAGGGAAGAAAGACCTCTTGCTAAGGAGATGTGTCCCTAAGTGACACTCAGTGAAAGAGAATGGAGAGCAGCATCATATAATCAACGCCCCAATCAATGTTAAAAGCTGTGTATCACCTGTGAATAGAATGGTCTAATTAAATTATCAATATGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266936 lncRNA upstream 51842 20552815 ~ 20553323 (+) True G233515
TU266929 lncRNA upstream 56149 20548810 ~ 20549016 (+) True G233508
TU266928 lncRNA upstream 56500 20548406 ~ 20548665 (+) True G233507
TU266075 lncRNA upstream 98507 20506026 ~ 20506658 (+) True G232733
TU266070 lncRNA upstream 108996 20490926 ~ 20496169 (+) True LOC110512886
TU266979 lncRNA downstream 4966 20627031 ~ 20627367 (+) True G233550
TU267077 lncRNA downstream 152830 20774895 ~ 20778525 (+) True G233644
TU267121 lncRNA downstream 291089 20913154 ~ 20915815 (+) True G233687
TU267194 lncRNA downstream 305833 20927898 ~ 20932727 (+) False G233754
TU267193 lncRNA downstream 306182 20928247 ~ 20932727 (+) True G233754
XM_021593011.2 mRNA upstream 73826 20509292 ~ 20531339 (+) True LOC110512899
XM_021593004.2 mRNA upstream 96734 20490868 ~ 20508431 (+) False LOC110512886
XM_036971566.1 mRNA upstream 131639 20450742 ~ 20473526 (+) False LOC110512870
XM_036971570.1 mRNA upstream 133953 20446669 ~ 20471212 (+) False LOC110512870
XM_021592997.2 mRNA upstream 165147 20381143 ~ 20440018 (+) False LOC110512801
XM_021593039.2 mRNA downstream 7347 20629412 ~ 20647074 (+) True LOC110512944
XR_005041385.1 mRNA downstream 80139 20702204 ~ 20709034 (+) True LOC118946510
XM_036964639.1 mRNA downstream 96792 20718857 ~ 20758800 (+) True LOC118936416
XM_036964643.1 mRNA downstream 136744 20758809 ~ 20783316 (+) True LOC110503853
XM_036971631.1 mRNA downstream 224932 20846997 ~ 20911413 (+) False LOC118946512
TU266948 other upstream 39453 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 760513 19827130 ~ 19844652 (+) True LOC110512505
TU265246 other upstream 1370870 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 1753183 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 2018324 18570009 ~ 18586841 (+) True LOC110511593
TU267841 other downstream 642010 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 664661 21286726 ~ 21287002 (+) True G234340
TU268500 other downstream 1395529 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 1436477 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 1436614 22058679 ~ 22068080 (+) False LOC110503910

Expression Profile