RNA id: XM_036964639.1


Basic Information

Item Value
RNA id XM_036964639.1
length 1442
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC118936416
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20718857 ~ 20758800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCGTCgtggagacataaaggaACTAAGGTTAGGACGTGGCAGGCCAACGCAGAATACCTGCAAAGTCTGGTCCCTGGAGCTGTGGTTGTTTAAGGCTTCAACACCCTGTCTGCTTTGAGCCTGCAGCATCGACCTTCAGATGCCaacagacatGTGTATGTCTGCGGGGAAAGTGCAAAGGCCAAGCAGGCGGTGATGGCGGTAGCCACCAAGCTGTGTCTCAGTGCCCTGGACCCGGGCTTTCTCTCAGTGGCCCGGGAACTGGAGGACTTCCCCCTGCAGCTGTTCCCCCAGTGGAGGCTCCCCCTGTACATCGCCATCGGCCTCAGCGCTGCCTTCTATCTGCTGATCAGAGACATAATCTATGCATACGTCACCCAGGGCAAAGACATCTCCTTCAGAATCATGGTCTGGCTAGAACTCAAATTGTTAGGAGGCTGGCCCATATGGgggaaatgtagggaaaatgTTATGGGACAGCTTCAAGAAAACAGTCGCTTTCATACTAAGTattttgtggctaattgaggtaagaaaGTCATTTCGCTCATTGATTATgaatgtatgaactacacattgagacatccagcccaaagcaggaggtttaaaaaataatttCTTAGTCACCAAAGTTCTGGAGTATGTCTTAACAGCATTGCACTTTCATGTAGCCTAATTTTGGTCAGTTAATTGCCTAACCACCAATCAAGTAACATTACGTTAGTGGAAAAGGGTGAACAGACAAAacattcaaatcctgttgctgcaggattattttgctgtgacacaATACTGGTCATattaagatcatacatctgtacattggacacacacctacagtatatagcaGGATTCAAGCACTGGTTTTGATTATtcgtctctgcctgtctctggtctctctctcagatcAGAGAGAACAGGACCACAGTGTTTGATAACACAATGGCCTAGCGTGGCGACTCCTACTTGTCCCTGGGAATTCTAGGAATTGGCCTGTACGTCCTGTTAGGAATCACATCTCTTCCCTCCGTCAGTAACGTTCTCAGCTGGAGGGAGTTCAGCTTCATACAGGTGGGATCAGCAGGACCGGTCACACTGAATGCTTAGTCCAGACTCACCTGCTAGGCACATTTTCTGCCCATTTTTTTCCTAGCGGTGGAGTGGAAAATCGATAGTTACGTAACACAATATTATTTTGGACGATGTTATATTGATACTTTGACTCCAAGTATCAATTTGTTGCTAGATAGTTAGCTAGGTCTAGTCGGCTGTGCCCCTGGTATTTTTCATCCATTAGCTTGTTCTCATATTCTTTTTAAACAGTATGCcaatgttttcagcacttttatttccatgactgataagAACATTTTCTCAtgctcttgtctctctgcagcagacacatAGTGAACAACatcaaattgcaataaaatcTAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266979 lncRNA upstream 91490 20627031 ~ 20627367 (+) True G233550
TU266975 lncRNA upstream 99032 20608900 ~ 20619825 (+) True G233546
TU266936 lncRNA upstream 165534 20552815 ~ 20553323 (+) True G233515
TU266929 lncRNA upstream 169841 20548810 ~ 20549016 (+) True G233508
TU266928 lncRNA upstream 170192 20548406 ~ 20548665 (+) True G233507
TU267077 lncRNA downstream 16095 20774895 ~ 20778525 (+) True G233644
TU267121 lncRNA downstream 154354 20913154 ~ 20915815 (+) True G233687
TU267194 lncRNA downstream 169098 20927898 ~ 20932727 (+) False G233754
TU267193 lncRNA downstream 169447 20928247 ~ 20932727 (+) True G233754
TU267192 lncRNA downstream 204956 20963756 ~ 20964155 (+) True G233753
XR_005041385.1 mRNA upstream 9823 20702204 ~ 20709034 (+) True LOC118946510
XM_021593039.2 mRNA upstream 71783 20629412 ~ 20647074 (+) True LOC110512944
XM_021593029.2 mRNA upstream 96792 20605165 ~ 20622065 (+) True tbrg4
XM_021593011.2 mRNA upstream 187518 20509292 ~ 20531339 (+) True LOC110512899
XM_021593004.2 mRNA upstream 210426 20490868 ~ 20508431 (+) False LOC110512886
XM_036964643.1 mRNA downstream 9 20758809 ~ 20783316 (+) True LOC110503853
XM_036971631.1 mRNA downstream 88197 20846997 ~ 20911413 (+) False LOC118946512
XM_036971627.1 mRNA downstream 88198 20846998 ~ 20911413 (+) True LOC118946512
XM_021593061.2 mRNA downstream 209644 20968444 ~ 21022357 (+) False mindy3
XM_021593064.2 mRNA downstream 211965 20970765 ~ 21022357 (+) True mindy3
TU266973 other upstream 110132 20608293 ~ 20608725 (+) True G233545
TU266948 other upstream 153145 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 874205 19827130 ~ 19844652 (+) True LOC110512505
TU265246 other upstream 1484562 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 1866875 18851249 ~ 18851982 (+) True G231438
TU267841 other downstream 505275 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 527926 21286726 ~ 21287002 (+) True G234340
TU268500 other downstream 1258794 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 1299742 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 1299879 22058679 ~ 22068080 (+) False LOC110503910

Expression Profile