RNA id: XM_036971663.1


Basic Information

Item Value
RNA id XM_036971663.1
length 2333
RNA type mRNA
GC content 0.46
exon number 11
gene id si:dkey-12j5.1
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20927954 ~ 20968368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAACAATACTCCAATGGCGTTTGTTTCAACACTTTATCAATGGAATTTGATCAAATACTCAACTAATTAAGGTTGTATATAGTACATGAGACAAGAAAACGCAACATCAAATCGATTGCCTTTGGCATTTTCAAACAGCGACTGTTCTTACTGCCGTTCACATTTAACTGGAACTGTTTGTCCACTATCTTTCTCCGTAGCTGCTGGGTTAGCAGTACTGAGCATGTGCACTCACACCCTACGCGTGGACTAATTTGTCCCCAATATTTTTACAGTGATTCGGACATAAATTATAAACTTGATTACAAATCGTCATTGTTGTAATGGGAGGCCAAACCAAGGGCAAAAAGAAGAGCAAAGCCAGGAGGAAAGATCCGCGCTCTAACGGAGGCTCTGGATTGGCAGGTCTGTCACCTCAAGATAGAATGAAGTTGAAGATGCAGGAGAAAGCCAAGAAAAAAACTGCTGAaaaatatactgtagaacaactATTGGAgaagACGGAGGAGTGTATGGACAGTTTGGAGTTTGAGATGGCAGGGAGGTTCTGTCAGCGAGCACTAGAGGTGGAGCCTGACAACCTCCTTACCCTGGACCTGCTAGGACACATCCACTCTGAACTGGGAGACACACAGAGGGCCAAGGAAGTGTTTCTGCATGCAGTGCAGTTGAGTCCTGAAGAAGGTCATAGTAAATACATGTCTCTAGGGCAGATACACACAGGCCAGGAGGCTGTGCAGTACTACACCAAAGGAGTACAGATACTACTGTGTATGCTGGAGAAACACGCACAAGCCACagcaggagctgAGGCAGCAGCCTCTCCACTCCAGGACTCGGGGTCAGAGATTCCGATAGCCAGACACGTGTGTGTGGCCTACTGTTCTGTGGCAGAGATCTACTTCACTGACCTCTGtatggaggagagggcaggagatCAGTGTCGAGAGGCCATAGAACGAGCGCTGACCTATCAGCCTGACAACCCAGAGGCTCTACAGCTGATGGCCAGCTACCTGTTCAGTACAGAGAAGAAccaggaggggaAGGAGTACCTGATGAGGAGTGTGGATGCGTGGCTACCTGCCCTGAAACAGAGTGAAGCTCCACCCAGCAGAGAGGACATAGAGGAggaacacacacagAGTGACATCCCACCATATGAATCCCGCATCACCACGGCCAAACTCCTCATAGAGGCAGAAGAGTACGAGACAGCAGTAGATGTGTTGGAGGGTCTACTAGAGGAAGATGACGAGGTGGTGCAGgtgTGGTATCTCTCAGGCTGGGTGTGTTACCtacagatggaggagagaagaagggaggagagagaagagagcgatgaggagagggaggagcgtGAAGCGTTGAAGGAGGCAGCCAGATCTTACCTGACCAAAGCCAagaagctgtatGTGAAGTTGCACTGTGACGACGGACCCATACTGGAGCACATGGAGCAGCTGCTGGTGGAACTGGGGggtgagacagaggaggaggaggaggagacagacccTGCCCTGGATGAAGACTTTGAGCCCAGCAGTgacgatgaggaggaggaagaggacgccATGGAACATTgaccacacccctctctctctaccagtgaTCTAGTGGTAAAACTGTGGGTTAGTACACGCTGAGACGTTCGCTGTGAATAAAGTAACACTCTCTATGTTTCCAATGTCTTTTTCTGCGATAGGTGGGGAAATAAAAAAGTATGTAAACAGCGTTTAGACTGCATACCACTCTCtacttttatagtgcactattaaCTCGGacattaaataaaggtaaagttTATAAAAATGTAGTTTTATAAAGACCTCTTACCCATCTCTGTACACCTCACAAACTAGACCCAGATGCAACACTTTGTTGGAAAGCTGCAGAGTTGCGAGTGCGACAGTCGATGGGCCCTTGAGAGAGGATGACTGGGCCCTTGAGTTTTCTCTGAATCTTTCTCGCTCGCTAGATATTGTCTGTATCGTGTTCTCAGAAGTGCCTTTCTGCTGTTCAACCCTGAGTTTCCCAGAATCatatgacttctctctctgtcatattaGTGCTGAATTGTTTTCAATATTAGAAAGGAGTGATTGACATGTCGACTCGAGATTTGTTTCCATTGCCCTGGAAATAACCAGATAAAAAAACAACTTATACTGTTTtgagagaaaaagacaaagaacaatctgcttcttttttttttatttgtgttgTAATAATGAGGTGAATTTTTGCTTCCCTTCATGACCCAGGCTCACTTTAGAAAGAGATTCCAATATGAATGTGACCTGCTAAAATAAAGAATTAACACAGAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267544 lncRNA downstream 15907 20914147 ~ 20915906 (-) True G234069
TU267481 lncRNA downstream 102541 20823376 ~ 20829272 (-) True G234013
TU267422 lncRNA downstream 199478 20731978 ~ 20732335 (-) True G233957
TU267420 lncRNA downstream 201755 20729822 ~ 20730058 (-) True G233955
TU267407 lncRNA downstream 222806 20702205 ~ 20709007 (-) True G233942
TU267585 lncRNA upstream 15797 20984165 ~ 20984574 (-) True G234102
TU267661 lncRNA upstream 120217 21088585 ~ 21091208 (-) True G234166
TU267666 lncRNA upstream 132411 21100779 ~ 21101316 (-) True G234171
TU267668 lncRNA upstream 134533 21102901 ~ 21103148 (-) True G234173
TU267674 lncRNA upstream 142571 21110939 ~ 21111461 (-) True G234179
XR_005041383.1 mRNA downstream 279761 20648378 ~ 20652052 (-) False glipr2l
XM_021593053.2 mRNA downstream 279762 20648378 ~ 20652051 (-) False glipr2l
XR_002471931.2 mRNA downstream 336258 20590446 ~ 20595555 (-) False LOC110512925
XM_021593101.2 mRNA upstream 123419 21091787 ~ 21100107 (-) False LOC110513019
XM_021593102.2 mRNA upstream 123419 21091787 ~ 21100107 (-) False LOC110513019
XM_021593108.2 mRNA upstream 123419 21091787 ~ 21100107 (-) False LOC110513019
XM_036971684.1 mRNA upstream 123419 21091787 ~ 21100107 (-) True LOC110513019
XM_021593116.2 mRNA upstream 143854 21112222 ~ 21126956 (-) False LOC110513063
TU267325 other downstream 280117 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 379816 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1175195 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 1283184 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 1332712 19542102 ~ 19599101 (-) False rims2a
TU267728 other upstream 210229 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 210229 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 477120 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 501293 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 530040 21498408 ~ 21498832 (-) True G234621

Expression Profile