RNA id: XM_021593064.2


Basic Information

Item Value
RNA id XM_021593064.2
length 1875
RNA type mRNA
GC content 0.47
exon number 11
gene id mindy3
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20968444 ~ 21022357 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCTTTGGCTGCTGAGGATCTTGGCTTTGAGCGGTTTCACAGCATCCTCCAGTAAGTAACTCTACTGACTGTGGCTCATCTCTCTATTGGCCATGACTTCATGGAGATGAAAGGACCACTACATTGCAGGAAACGTATTGTGAAGTCATTATCAGAGCTTAGAGAGGAGGTGGTGTCTCTCTACGAATCCTGGAAAGGGCGCTGTGGAGTCCTGCTCTTCCTCTACTCTGTCATCCTCACCAAGAGGATAGAGAACATCAGGAATGAGATTGAAGATACTACAGAGCCTCTCATAGATCCAGTCTATGGCCACGGCAGTCAGAGTCTGGTTAACCTGTTAGTGACGGGCCATGCTGTCTCTAATGTGTGGGACGGAGACAGGGAGTGCTCTGGCATGAagctCCATGGTATCCACAACCAGGCAGCAGTTGGCTTCCTCACTCTCATGGAGTCACTACGCTACTGCAAGGTGGGTGCGTTCCTGAAGTCTCCTAAATTCCCTATATGGATCCTTGGCAGTGAGACTCATCTCTCAGTGTTCTTCGCCAAGGAGATGTGTCTGGTGGCTCCTGAGTCTCCGTCTGAACAGGCCAGGAGAGTCTTCCAAACCTTCGACCCAGAAGatAACGGCTTTATTCCAGACTGTCTGTTGGAGGAGGTGATGAAGGCACTAGACCTCGTCTCAGAACCTGAATACTATGTGAGTCTGATGAAGAGTAAGTTGGATCCAGAGGGCTTGGGGATCGTGCTGCTGGCTCCGTTCCTCCTGGAGTTCTTCCCTGATCAGGATACTGGAATCCCAGACTCCTtccctgtctaccactacaatgGCCTGAAACAGTCCAACCACAACGAGAGGGTGGAGTATGTGCAGGGTTCAGCCCTGGTCCTGGGCTTTGAGGACCCCATGGTGAGGACAGATGACACTCCGGTGAAGCGCTGCCTCCAGACCAAGTGGCCCTACATAGAACTGCTGTGGAATACTGACCGCTCCCCTTCACTTAACTAACTCGCTGCTAGGGTCGTAGAGGACTGACTGATCTCTAAAGGAAAGAAGGCCACAAAGACTGAGAGACACAGTGCATGTACACTGTTGCACACACAGGAATTTGCTCACTGTCCTGGGCaggagaaaaacacacacagaacgcCACTACACACACTTGACATACAGACACACTTGTTTACTGTTAACTCTGTTGTGTTTTACATGACTGTAAATTAAGTCACAGGATGTTTTTGGTTTGTTGTAAAAAGCTGAATGACTTATCACTCTATAGATGACTCTGTTTTATACTCTGGGATATATTCACCTAATAAGAACTACATATAAAGGAGATAGCTGACCTCGTTGGAATGTAAACCtgtaactgactgactggatcaATGCTTCTGTACCACCCAGCTGTCTGACTGTTAAAGAGAAACAACCAAAGCTTTTTCCAAgacgcgcgtgcacacacacacacacacacactcctattcTAACTACAGCTAAGTTAGTTTGACCTCTTAGTACTGAGGCAGGGTATCCCTGACCCAGATTAGGTTTACTGCATTATCTCCATTGAAATAGTCCAGGAGCAGTCTCAATCTGGGGCTGGGAAGCTAGCCTCAAGGGTTTTCACAGGAGATTAGAGTAAAAGGgtaacgcacacacatacacacaccctggtGTTTACAGCATAAAGGGACCAATCACAGCAGCGATATAAGGAAATTCCTCCTGTTTAGTGGTTTGACCTGGGAGTAGAACCTTTGGCTGGTTTTACACTTCGAGTGACTTCTCTCTTCATACCAACACAGGAAGTGATATGGTATTCATGTATTTATTGCCCCCCCTCCCAAAAAACTAATAAACCCATTTTTCTTCA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267192 lncRNA upstream 6610 20963756 ~ 20964155 (+) True G233753
TU267194 lncRNA upstream 38038 20927898 ~ 20932727 (+) False G233754
TU267193 lncRNA upstream 38038 20928247 ~ 20932727 (+) True G233754
TU267121 lncRNA upstream 54950 20913154 ~ 20915815 (+) True G233687
TU267077 lncRNA upstream 192240 20774895 ~ 20778525 (+) True G233644
TU267262 lncRNA downstream 74640 21096997 ~ 21100178 (+) True G233820
TU267266 lncRNA downstream 85128 21107485 ~ 21107689 (+) True G233824
TU267272 lncRNA downstream 88682 21111039 ~ 21111260 (+) True G233830
TU267284 lncRNA downstream 109956 21132313 ~ 21132544 (+) True G233840
TU267319 lncRNA downstream 145268 21167625 ~ 21167864 (+) True G233869
XM_036971631.1 mRNA upstream 59352 20846997 ~ 20911413 (+) False LOC118946512
XM_036971627.1 mRNA upstream 59352 20846998 ~ 20911413 (+) True LOC118946512
XM_036964643.1 mRNA upstream 187449 20758809 ~ 20783316 (+) True LOC110503853
XM_036964639.1 mRNA upstream 211965 20718857 ~ 20758800 (+) True LOC118936416
XR_005041385.1 mRNA upstream 261731 20702204 ~ 20709034 (+) True LOC118946510
XM_036971671.1 mRNA downstream 3780 21026137 ~ 21091292 (+) True itga8
XM_036971736.1 mRNA downstream 134819 21157176 ~ 21164038 (+) False LOC110513109
XM_036971743.1 mRNA downstream 134819 21157176 ~ 21164038 (+) True LOC110513109
XR_005041413.1 mRNA downstream 144193 21166550 ~ 21169290 (+) False LOC118946533
XM_036964655.1 mRNA downstream 217678 21240035 ~ 21263153 (+) False dcst2
TU266973 other upstream 362040 20608293 ~ 20608725 (+) True G233545
TU266948 other upstream 405053 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 1126113 19827130 ~ 19844652 (+) True LOC110512505
TU265246 other upstream 1736470 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 2118783 18851249 ~ 18851982 (+) True G231438
TU267841 other downstream 241718 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 264369 21286726 ~ 21287002 (+) True G234340
TU268500 other downstream 995237 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 1036185 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 1036322 22058679 ~ 22068080 (+) False LOC110503910

Expression Profile