RNA id: XM_021593102.2


Basic Information

Item Value
RNA id XM_021593102.2
length 2466
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110513019
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21091787 ~ 21100107 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACACGAGTGATTTATACCGACATCGAGGGAGGAAGGAAAAGCGGCTTGCCATGAAACCAGTTTGAGACTGGACATCAGTGTCGGCAGCTCACTCGGACAGTTTGGGACTTTGGTGTCAGTGCAGGCAAAACCTACTTCGCCTTTTTCCTATTGGAACGAGTGAGGTGGGGACGTTTACGCAGTGTCTCATACGGAGCTACAACAGAGGTGTGATTTTGCCCCTGTACTGAGCCTGAGCCTGGTCTGCAGCCCTCGGCCTGAGGCTGGAAGGGGATGGGGACACTGGCCCTTTGCAGCCACTACTCACAGCTGTCATGGAAACGCAGCGTCATAGTGGCAATGCTACTGTTTCACCTGTGCTGCCTGCAAGTATGGGCATCCTGTCGCATCCTGAGGTGCAACTCTGACTTTGTAGCTGTCACCCTGGACCTTGGGGGCAGCGGAGGGGGCggaggaggaggcagcagagAGGGCAATGCGGGCTACTGCAGCGCCCTCCGCTCCTATGCCATGTGTACCCGCCGCATGGCCCGTGCCTGCCGGGGCGACCTGGTCTACCACTCGGCCGTGCAGGGCATCGAGGACCTCCTCATCCAGCACAGCTGCCCCAGGACAGGCCCCACCGCTCAGCCCCGGCCCCTGCCACAGGCCCCCATCTCTGGGGACGCCTGTATCTATGAGAAGGGCTACCTCCAGCGTGAGGGCCGGACCCCTGACTATCTCCACTGTGGAGTGTTCGGGGATCCCCATGTTCGCACCTTCCGTGATGAGTTCCAGACGTGCGCTGTACAAGGGGCCTGGCCACTGATAGATAATGAGTATCTATACGTTCAGGCAACAAGCGCCCCCATGAGAGGAGGGGTGTATGCCACGGCTCTCATCACGATTACCATCATCTTTAAGAACTGGCGCCAGTGTATCGAGCAGCAGATCTACCAGGCGGAGCTGGACAACGTTCCCGCAGCCTTCGTGGACGGCTCAGTGACCAGCGAGGAGAGGCAGGGCCAGCACAGCCTGAGCGTCCACTCTGATCTGCCTGGGCTCCAGGCTGAGATCCGTGCTGCCCACATCGGCACCACCCTGGTGGTGCGTCAGAGTGGGCGGTCCCTGGGCCTGTCAGTACGCTCGCCAAGTGCCATTGCTGAAGCATTCACCCCCGAGCAGGACCTGCAGCTGTGTGTATATGGCTGCCCACCTTCACAGCGCCTAGAGACGCTACCCagcccctcttcttcctcctccctttcctcctcttcctccagccaGCCCTCTGCTGCAGCCCATGTCCACTGTGCAGCCCTCCTCCCTGCTAGGGACATCTACTACCAGGCCTGCCTGTTTGACCTGCTGGCCACAGGGGACCTCAACTCCAGCACGGCGGCTGTGGCGGCCCTGGAAGACGCCCGGGGAATGATCTCAGACCCCAATAAGGTGCATCTGCTACTGGTGGGCAATGCCGATGGTAGTAGCCCATGTCTGCCTCTGATCCTGGCTGTGGCTGTCCTATCAGAGCATCTGTTGGCTCTGTGGACGGGGCAGTGTTTATGAACTAGTGACTGGTAGGAGCTGTGGGCATAGCATTAGCCACACTGACTCTGACTGAGcagatgctttaaaaaaaaatcttgatGGCCTTGTTTCATAAACAACAGGCATCACCTTTGACTGGTTGGAACCCAGTGGCATTGTGCCTGGTTACAGAGGTCAATGTTTCCCTGATTTGTTTTCTTCCAGCAGGAGAAGAATGTTGATAGGAATAAATACAGGTCAATGCTCTCCGTGAGGATAGAAGTGAACTATTGAAGCCTGACACTAGTTGTGTTGATTCTAATCCCTTAACTACGCTGagacaaatgtattaaaacaataTGTATTATCCATCTCAGCACAGAGGATGGCCTGTTGAATAATCCAGATAGTTAATGGAATCTTCAactctttttttttatatactttctgttattttctgtttatgATGGAGGGGAATTTAGTAGTTTGTTTATAGTAAATATAATACTACAGTGGTATCATCCTCTGTAAAGAAACTAATTTATCACTAATTTATTACGTCATCTTTGTGTGTCTACATTTGGTTTGCAGTGAGTTGTAATAACGTCTCGATTCATTTCATAAGGGACTGTTTTTGAATGTACGTTTGGTTCATATGTCAGTATTTGTAAGACAATGTTTACAATGTATTGTTCATCCTGTTCATATTTTTACCTACTGTAGTTGCCAAAGTAAAAAAGATATCTTCCCAAAGTTACTCATACCATCTTTCTAAAACAATAGAGATCAAACAAGGAGTCAATTAAAATAATATATTGTTTTCCAGATGAAATTATCTCCAATTTCCTTCCATGTAATAATGTGATCTCTGTCAAGGATAAAACATATTTATACCTACAGATTCTAATATATTTCCCTTTGTGAGTTTTATTAAATTTGatcgtttttttccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267661 lncRNA downstream 579 21088585 ~ 21091208 (-) True G234166
TU267585 lncRNA downstream 107213 20984165 ~ 20984574 (-) True G234102
TU267544 lncRNA downstream 175881 20914147 ~ 20915906 (-) True G234069
TU267481 lncRNA downstream 262515 20823376 ~ 20829272 (-) True G234013
TU267422 lncRNA downstream 359452 20731978 ~ 20732335 (-) True G233957
TU267666 lncRNA upstream 672 21100779 ~ 21101316 (-) True G234171
TU267668 lncRNA upstream 2794 21102901 ~ 21103148 (-) True G234173
TU267674 lncRNA upstream 10832 21110939 ~ 21111461 (-) True G234179
TU267682 lncRNA upstream 27019 21127126 ~ 21127334 (-) True G234187
TU267692 lncRNA upstream 35435 21135542 ~ 21136903 (-) True LOC110513075
XM_021593073.2 mRNA downstream 123419 20927954 ~ 20968368 (-) False si:dkey-12j5.1
XM_021593069.2 mRNA downstream 123419 20931813 ~ 20968368 (-) False si:dkey-12j5.1
XM_036971660.1 mRNA downstream 123419 20931813 ~ 20968368 (-) False si:dkey-12j5.1
XM_036971663.1 mRNA downstream 123419 20931813 ~ 20968368 (-) True si:dkey-12j5.1
XR_005041383.1 mRNA downstream 439735 20648378 ~ 20652052 (-) False glipr2l
XM_021593116.2 mRNA upstream 12115 21112222 ~ 21126956 (-) False LOC110513063
XM_036971713.1 mRNA upstream 12115 21112222 ~ 21133895 (-) True LOC110513063
XM_021593124.2 mRNA upstream 35970 21136077 ~ 21152356 (-) False LOC110513075
XR_002471956.2 mRNA upstream 35970 21136077 ~ 21152356 (-) False LOC110513075
XR_002471957.2 mRNA upstream 35970 21136077 ~ 21152356 (-) False LOC110513075
TU267325 other downstream 440091 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 539790 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1335169 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 1443158 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 1492686 19542102 ~ 19599101 (-) False rims2a
TU267728 other upstream 78490 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 78490 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 345381 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 369554 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 398301 21498408 ~ 21498832 (-) True G234621

Expression Profile