RNA id: XM_021593116.2


Basic Information

Item Value
RNA id XM_021593116.2
length 5039
RNA type mRNA
GC content 0.48
exon number 22
gene id LOC110513063
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21112222 ~ 21133895 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATATTATGTCTGTATAACATGAGAATTTAGAAAGTTGGAAACACCGCACGCCTCAGTTTATAGCAGGCGAATgaactccctctctcactgtcacaTCCACTCTGTGCGGACGAGGTACTTGGCTGGAGCGCGCCCGTAAGAAGCCAGTCGACATTTGTAACTGTTCTTAAACCTACATTCTGCGGTCAACTCACTCTGCAGACTTATTTTTGTTCACTTTGAAATTAAGCTCCATTCATCAACATCAAACTGGACTCTCGGCGGATAGTAATTTACTGCTGTTGACTTTCTTGTCAACTTTCACACACCGTTTCTTGGGACATGGGTGCGAGGCGCGATGTGCCAACTTTTCTGGCTCTATCCACATTTCTATTCGTTGCAACATGTGAACCAATGGATCAGAAATATATgcaagtCATTGACATGCTAACCCTGGACTCCAAGACCAGTGTGTCTGCGGTGGAGAAGGTGACAGGTGCCATGAGTGTGTTCAGTGACATCTACATCGTGTCCACATTCCGCTTGCCTCCCAAGATGGGAGGGGTGCTGCTGGGCTTCTACAGCAAAGAGGAGAACAAGAAGTACCTGGAGCTGGCCATCATGGGAAAGATCAACAAAGCTCTGGTGCGTTACGTGAGGGAGGATGGCAAAATTCACACAGTGAACCTCCAGAGCACAAACCTGGCTGATGGTCGCACACACTCCATTATTCTCCGGATCGGAGGCCTGCGCAGAGACAACCTACACCTGGAGCTCTACGTCAATTGTCGATTGGCTGACTCCAGCCAGGGCCTCCCTCCATTGGTCCCTCTCCCCGCGGAGAAGGTGGAGATTCGTAATGGCTTCAAGGCCTACGCAAGGCTACAGGGTGCTGTGGAGTCCCTCAAAATTGCGCTAGGGGGCAGTGTGGCCAAAGCAGGTACCCTGACAGACTGTCCATTCCAGGGGGATTCATCAGTCTACAGCACAGTCGGTGCGACTGCAGAAGTGAACTCCATTCTAGGAGACCACACAAAGGCTCTGATTGGTCAGCTGATCATCTTTAACCAGATCCTAGGAGAGCTGCGAGAGGACATCAGAGAGcagGTGAAGGAGATGTCCCTGATTAGGAACACCATTCTGGAGTGCCAAGTGTGTGGCTTCCACGACCCTCGTTCCCGCTGCTCCCCCAACCCCTGTTTTAAGGGCCTGTCCTGCATGGAGACCTTTGACTACCCAGGGTACCGCTGTAGTCCCTGTCCGGAGGGCATGACGGGCAACGGAACCCACTGCCAAGACATTGACGAGtGTTCCATAGCCCAGCCCTGCTACTCTCCAGGTGCGTGTATAAACACAGTGAAGGGTTTCAGCTGTGAGCTCTGCCCCCCTGGTCTCTGGGGCCCACCCCTCTTTGGGGTCGGACTGGAGTACGCCAACCACCACAAacagGAGTGTGCAGACATTGATGAGTGTATTGAAGTTGCCAACGCCTGTGTGCCCCACTCCATGTGTACCAACACCATCggCTCATTCAGGTGTGGTGGCTGTAAGGTGGGTTACTTGGGGAACCAGACAGTGGGCTGCGTGCCCCGTAGGTCCTGTGCCACACTCAGCTTTAACCCTTGTGATGCCAACGCCCACTGCATTATAGAGAGGAACGGAGAGGTGTCCTGTGCGTGCAACATTGGCTGGGCCGGTAACGGGAACACTtgtggcacagacacagacattgaTGGATACCCAGACCGCTCTCTGCCCTGTATGGACAATGACAAGCACTGTAAACAGGACAACTGTGTTTACACACCCAACTCAGGCCAGGAGGACGCAGACAACGACGGCATCGGAGACCAGTGTGACGAGGACGCAGATGGGGACGGCATCAAGAATGTGGAGGATAACTGTCGACTAGAACCCAACAAAGATCAGCAGAACTCAGACACAGACTCTTTCGGTGACGCCTGTGACAACTGTCCCAATGTCCCTAACATTGACCAGAGGGATACGGACAACAACGGGCAAGGAGACGCCTGTGACAATGACATAGATGGAGATGGTATCCCCAACGTGCTAGACAACTGCCCCAAAGTCCCCAAccccatgcagacagacagggatggaGACGGGGTAGGAGACGCCTGCGACAGCTGCCCTGAGATCAGCAACCCCATGCAGACGGACATTGACAATGACCTGGTGGGGGATGTGTGTGACACTGACCAGGACACGGATGGGGACGGTCACCAGGATTCCAGGGACAACTGCCCTGACCATCCCAACAGCTCCCAGCTGGACTCGGACAATGATGGCCTTGGGGACGACTGTGACGATGACGATGACAATGACGGATTCCCAGACGTACAAGACAACTGCAGACTTATCACCAATCCCAACCAGAAAGATTCCAACAGTAACGGGGTGGGCGATGTGTGTGAGAACGACTTTGACAATGATTCAGTCTGGGATCTGATTGATGTGTGCCCTGAGAGTTCAGAGGTTACACTGACAGACTTCAGAGCCTATCAGACAGTCATTCTGGATCCAGAGGGCGATGCCCAGATCGATCCCAATTGGGTGGTGCTCAATCAGGGCATGGAAATAGTTCAGACCATGAACAGTGATCCTGGTTTAGCTGTGGGCTACACAGCGTTCAACGGGGTGGACTTTGAGGGCACCTTCCACATCAACACGGTGACGGACGACGACTATGCAGGCTTCATCTTCGGCTACCAGGACTCCTCTTCCTTCTACGTGGTGATGTGGAAACAGACAGAGCAGACCTACTGGCAGTCGACACCCTTCAGGGCCATGGCCCAACCTGGCCTGCAGCTCAAAGCAGTGAAGTCCCGTACAGGGCCTGGTGAGTACCTGCGTAACGCCCTGTGGCACACAGGGGACACCAACGAGGAGGTGAAGCTGCTGTGGTCGGACCCACGGAACGTTGGCTGGAGAGACAAGACATCTTACCGCTGGCAGCTCAGCCACAGGCCCCAGGTGGGCTACATCAGGGTGAAGTTATATGAGGGGACGGAGATGGTGGCTGACTCTGGCGTGGTGATTGACACTACCATGAGAGGCGGACGACTGGGGGTCTTCTGTTTCTCCCAAGAGAACATAATCTGGTCCAACCTGCGCTACCGCTGCAACGACACTGTTCCAGATGACTTCAACCCATATCGCAAACAGGTTCTGCTGCACATCAAGGTGTGAGAGGATTCGAGGATGTGTGAGTGCTGAGGCATGTAGATGAGTAACCTGTCCAGCACTGTCTCtctacacacaaacactcacacacacactcgtattGCCTCTCAGTACAGAATTTCAACTGCTGTTAaaatgtgtgtgactgtctgcCCATGAGTGAAAGGGGAGGAGTTTCAGAGTTGTGGTAAAGGAGGAAGAAGAACCCATTTACAACATTGTTATACCAGACTGGAAAAGCAAAAAGGTACTAGACTTTGGAAGAAAGTATACATGATAATGAATGTATGTAGGACTGTGTTACTTCTGGGTTTGAGTTGCTGTCCTTGCCTTCAATTTCACTGTATGAACGGTGGTTGTGTGAATGATAGCGGTTAACCGTTGAGTTTGACTGTTGCGTTAGGTATGAGTGCTCTTGttgctttgtgtttgtgtatttacAGCTATCATAGGAATAAATTGATTATATTTTGTGTTTTAAGACTGAACAGTTAaaggatgttttttttaaatctcatatctaactgtaaaataaaaaacataagcTAGTGTTACAGGGATGATGGGAATTTGAAAAATACTGTACATCCTCTGAATATGAAACTCCGGGTAACTCTGTCATGACCAGATAATGTCATCTCAGCAGCAAAATACAGATCTGTCACAAGAGACTGTAGACTTGCAGTTATTTAGCCATATTACTTTAAGCCTTTAATAGTGGAATTATGTCCCTAATTTGAATAAATGTGGATTCTAGTGTATACTTTCCTGGGCATCTGATTCTGTGCCCAGTAATTGAATATGAAATAAAGCCTTATTGGATGTGTTTCTTTAAGTCATCTTTAACTGATTAGTTAAACAGAAGCATAAACAAAGAGCAACACAGTCTTTGTccacaaaaaaataataaacaatTGAATGTCTTAATGTTTATTTGACCTTTGTGATTCTGTACACAACAAGAATGCTAATGAATGATACGACTtagaaaaaaaaactgtcaagAGCAACTGTGAGTGTGCACTGCTGTTCCGAGGTCATCCAGTCAGTGAAGTATGTGGTGACACTGGTGCTAACTGTATCTAATCGTTGAGTGCTGTGGTTGTCATCATACCTCCCAGGAGCAGACAGACCCCAGGGCTCAACTGACTGAACTGCCCAgtctgtctccactgtcttcTTCTTTGTTCCATATTAATAGCCAGTCATAGAAATCCATATACCTTGTACAGAACTTGCTATATTTAATATCATATATTATGTGTCACATAGCCTAATTACGTTATTCTTATGTCggtgtagtaacactgtaataACTCAATGATGACACTGTATTTTAACATGTTACATTGTAACTTGCTTTGTAATGGAGTTGAGCATTTTTGTGCTACCACATAAGTGAAATAAAGCCTCTTCCCATTCTACTTGTGTAATAACAACAAAACAAGTTCCCTGCTGAGGACAGACTTGAAAATGAATTTGGATTCCATTTAGAATGGAGTATTTTAAGCATTATTCTATTAAGCTGGAGATGTCCTGCTATTGACCCCTGACTACTGTGTCTGGATTCCAATCTGATCATTCATTCTCTTTGCTCTATCCTGACTAACTCTCTCACAGGTGTGAATAGATGCAATATGATAGGCATTTGTCATCCTAGGTCTTGTTGGCCATACAGAGTTTGTGCAGTACTGCTTCCTATCCCAATATGAGGGAACTTTCAGAGTGAAGTCACAAGGGCAGAGGGAAGAGAATGACTTAGTGGAGTTGGCAAAGCTCCTCACGTGgcagctagccagccagtgtCTGGTGCGGACAGTGGGACCGTTTGGAAGCAGAGGCTTGCCAACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267674 lncRNA downstream 761 21110939 ~ 21111461 (-) True G234179
TU267668 lncRNA downstream 9074 21102901 ~ 21103148 (-) True G234173
TU267666 lncRNA downstream 10906 21100779 ~ 21101316 (-) True G234171
TU267661 lncRNA downstream 21014 21088585 ~ 21091208 (-) True G234166
TU267585 lncRNA downstream 127648 20984165 ~ 20984574 (-) True G234102
TU267682 lncRNA upstream 170 21127126 ~ 21127334 (-) True G234187
TU267692 lncRNA upstream 8586 21135542 ~ 21136903 (-) True LOC110513075
TU267717 lncRNA upstream 41214 21168170 ~ 21170498 (-) True LOC110513123
TU267727 lncRNA upstream 47725 21174681 ~ 21175325 (-) True G234223
TU267768 lncRNA upstream 71814 21198770 ~ 21204030 (-) False LOC110513176
XM_021593101.2 mRNA downstream 12115 21091787 ~ 21100107 (-) False LOC110513019
XM_021593102.2 mRNA downstream 12115 21091787 ~ 21100107 (-) False LOC110513019
XM_021593108.2 mRNA downstream 12115 21091787 ~ 21100107 (-) False LOC110513019
XM_036971684.1 mRNA downstream 12115 21091787 ~ 21100107 (-) True LOC110513019
XM_021593073.2 mRNA downstream 143854 20927954 ~ 20968368 (-) False si:dkey-12j5.1
XM_021593124.2 mRNA upstream 9121 21136077 ~ 21152356 (-) False LOC110513075
XR_002471956.2 mRNA upstream 9121 21136077 ~ 21152356 (-) False LOC110513075
XR_002471957.2 mRNA upstream 9121 21136077 ~ 21152356 (-) False LOC110513075
XR_002471958.2 mRNA upstream 9121 21136077 ~ 21152356 (-) False LOC110513075
XR_002471955.2 mRNA upstream 9138 21136094 ~ 21152356 (-) False LOC110513075
TU267325 other downstream 460526 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 560225 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1355604 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 1463593 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 1513121 19542102 ~ 19599101 (-) False rims2a
TU267728 other upstream 51641 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 51641 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 318532 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 342705 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 371452 21498408 ~ 21498832 (-) True G234621

Expression Profile