RNA id: XR_002471956.2


Basic Information

Item Value
RNA id XR_002471956.2
length 1715
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110513075
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21135542 ~ 21152356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCGAGTGAAAGGTTGTTAAATTATTTCAAGATGGCTGCCCCCTCGCAGATGGCAACCTCTGAGCTGTACTGCTGGGAAGGCGATTGGGATTTACCGTCTGTCGACACTGAGTGTTTCATTGTATTGGCTTATGCAAAGTTTGCAGGCGCACCCCTCAAATTTCACAAAATCGGCAACCCCTGGAGAAGTCCCACTGGCTCCCTGCCTGCCCTGAAGACCAGGGAGAATGGGAGTCTCTCTCAGCCCAGTGACATTATCATCCACCTCAGGAAACAGAAATACAATGCCGACTTCGACCTGTCTGCCAAAGAGGAAGCAGACACTCTGGCCTTCATCTCACTCCTGGAGGAAAAACGGATGCCAGCTCTGGTCTATACTCGGTGGATTGACCCTAAGAACTATGTGGAGGTGACTCGGCGCTGGCACGCGAAGCACGCCCCATTCCCCCTGAACTTCTTCCTGCCCGGCAGCATGGAGGAAGGAATCCATGCTGAAACGCCTGTGCACACTGTACTGCGATGCTATGGAGTGTATGAACCATCTCTCGCAGAGGCTGGGCTCAACAAGTTCTTCTTCCGGGACTCACCTTCATCTTTGGACGCTTTTGTCTTTGGCTACTTGGTGCCCATCCTGAAGATGAAACTGCCCAATGGAAGACTCCAATAGCACCTCAAGTCACTGGACAACCTGAGCCACTTCTGCTCCAACATCCTGGCGCTCTACTTCCCCAGTGAGGGACGAGATGTGGGACcacataacatactAAGGTTTTAGTCGCAAGGTGTCCTCTCAGCCTGAAGGGGGTGACGCTGATAACGAGCCTGGTAAGAGGCGCAAGCAGCTGGGCGCCATGTTGAGCTACGCCCTCCTCACTGGCATTGTGGCTATTCAACATGTCAAGCAGGAGGCATTAGACCACCGTTCCCCAGGTCTCATGTCACTCTCCTCCaacgaggaggaggatgaggagggcagaggaggaggagacggctGCAATTCAAAACTGATCTCCTGTGTCTATTCCTAATTCTTCGTTGACGCTCCCTCAGAAGTCTGGAAAAAGACTGGAAAGGTGTTAACCAATATGGCAGAAGCTCCAGTTAGCCTTTTAGACTTGGTGGAAGGTTTACTCTAATGCTGATGCCTCAACAATCCCTTCAGATCCTGGAGGAGGAGTCAATACAAAGAAATTTGCTATGTATGCTATAGTGAAGACTGTGCTGGCCCTATTCCTGCATTGCAGCAAGTCAATAAAATAAACAGGGAAGTTCAATAAATCACTTCAATGTTCCAATACATCTATCTGCTTGAGGCTTGCTTTAGGATGCCAGCCATACATACATTATTGTCTAATTCAGAGTTGCAAGAAGCTCTTTGACTTTGTAAAGCAAGCCTTTACACAGCGAGCAGATGTATTGGAACATTGAAGTGATTTATTGAACTTCCCTGTTGGATAATAAATAATTTATGGTATGTAAATTTGTAATGCAATTGTTAATAGAGTTAACCTTATTCAATCTTGGTTTGAGGGCAGAAGTAATGTTACACACAGGTTGCACACAAACACCTTAACCATAAACATTTCTTGCctaaactttttttttcttttttttctccccaatttcgtagtgtCCAATTGTTgtctacaactcccgtacgggctcgggagagacaaaggttgaaagtcatgcgtcctccgatacacaacacaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267682 lncRNA downstream 8743 21127126 ~ 21127334 (-) True G234187
TU267674 lncRNA downstream 24616 21110939 ~ 21111461 (-) True G234179
TU267668 lncRNA downstream 32929 21102901 ~ 21103148 (-) True G234173
TU267666 lncRNA downstream 34761 21100779 ~ 21101316 (-) True G234171
TU267661 lncRNA downstream 44869 21088585 ~ 21091208 (-) True G234166
TU267717 lncRNA upstream 15814 21168170 ~ 21170498 (-) True LOC110513123
TU267727 lncRNA upstream 22325 21174681 ~ 21175325 (-) True G234223
TU267768 lncRNA upstream 46414 21198770 ~ 21204030 (-) False LOC110513176
TU267769 lncRNA upstream 46414 21198770 ~ 21201609 (-) False LOC110513176
TU267771 lncRNA upstream 46414 21198770 ~ 21206057 (-) True LOC110513176
XM_036971713.1 mRNA downstream 2182 21112222 ~ 21133895 (-) True LOC110513063
XM_021593116.2 mRNA downstream 9121 21112222 ~ 21126956 (-) False LOC110513063
XM_021593102.2 mRNA downstream 35970 21091787 ~ 21100107 (-) False LOC110513019
XM_036971762.1 mRNA upstream 15784 21168140 ~ 21172478 (-) False LOC110513123
XM_036971768.1 mRNA upstream 15784 21168140 ~ 21172478 (-) False LOC110513123
XM_036971752.1 mRNA upstream 15784 21168140 ~ 21172480 (-) False LOC110513123
XM_021593155.2 mRNA upstream 46409 21198765 ~ 21230066 (-) False LOC110513176
XM_021593156.2 mRNA upstream 46409 21198765 ~ 21230066 (-) False LOC110513176
TU267325 other downstream 484381 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 584080 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1379459 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 1487448 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 1536976 19542102 ~ 19599101 (-) False rims2a
TU267728 other upstream 26241 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 26241 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 293132 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 317305 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 346052 21498408 ~ 21498832 (-) True G234621

Expression Profile