RNA id: TU267692


Basic Information

Item Value
RNA id TU267692
length 805
lncRNA type sense_over
GC content 0.57
exon number 2
gene id LOC110513075
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21135542 ~ 21152356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAACATGTCAAGCAGGAGGCATTAGACCACCGTTCCCCAGGTCTCATGTCACTCTCCTCCaacgaggaggaggatgaggagggcagaggaggaggagacggctGCAATTCAAAACTGATCTCCTGTGTCTATTCCTAATTCTTCGTTGACGCTCCCTCAGAAGTCTGGAAAAAGACTGGAAAGtgtCCAATTGTTgtctacaactcccgtacgggctcgggagagacaaaggttgaaagtcatgcgtcctccgatacacaacacaaccaagccgcactgcttcttaacacagcgcgcatccaacccggaagccagccgcacctggcaaccttgcacctggcgcactgcgcccggcccgccacaggagtcgctggtgtgcgacgagacaaggacatccctaacccggacgacgctaggccaattgtgagtCGCCCAACGACAGAgcttgggcgcgaacccagggtctctgatgctgcagtacagcgcccttaaccactgcgccacccgggaggctcttGCCTAAACTCAATCCAACCCCCTGAAcctgcctaaccttaaccaattaGGATTACTTGCCTAAACTTAACCAAACACATTTGTTTCTGCCCTCGAGGCAAAGCTGCCCTCGGGACCAGATACAATAAATATATGCCAAAAATTAGGATGTGGGGTGTAAAGATGAGGATGGAACACCCGTAGCATGAATATATAGCATTTTTTATAGTGCGAAAAAGAGTTGAAAAACCAAACTAAATGTATTCATGTTGGCTTTATTTTCATGGTTGAATAAATGGGTCACATAC

Function

GO:

id name namespace
GO:0006626 protein targeting to mitochondrion biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267682 lncRNA downstream 8208 21127126 ~ 21127334 (-) True G234187
TU267674 lncRNA downstream 24081 21110939 ~ 21111461 (-) True G234179
TU267668 lncRNA downstream 32394 21102901 ~ 21103148 (-) True G234173
TU267666 lncRNA downstream 34226 21100779 ~ 21101316 (-) True G234171
TU267661 lncRNA downstream 44334 21088585 ~ 21091208 (-) True G234166
TU267717 lncRNA upstream 31267 21168170 ~ 21170498 (-) True LOC110513123
TU267727 lncRNA upstream 37778 21174681 ~ 21175325 (-) True G234223
TU267768 lncRNA upstream 61867 21198770 ~ 21204030 (-) False LOC110513176
TU267769 lncRNA upstream 61867 21198770 ~ 21201609 (-) False LOC110513176
TU267771 lncRNA upstream 61867 21198770 ~ 21206057 (-) True LOC110513176
XM_036971713.1 mRNA downstream 1647 21112222 ~ 21133895 (-) True LOC110513063
XM_021593116.2 mRNA downstream 8586 21112222 ~ 21126956 (-) False LOC110513063
XM_021593101.2 mRNA downstream 35435 21091787 ~ 21100107 (-) False LOC110513019
XM_036971762.1 mRNA upstream 31237 21168140 ~ 21172478 (-) False LOC110513123
XM_036971768.1 mRNA upstream 31237 21168140 ~ 21172478 (-) False LOC110513123
XM_036971752.1 mRNA upstream 31237 21168140 ~ 21172480 (-) False LOC110513123
XM_021593155.2 mRNA upstream 61862 21198765 ~ 21230066 (-) False LOC110513176
XM_021593156.2 mRNA upstream 61862 21198765 ~ 21230066 (-) False LOC110513176
TU267325 other downstream 483846 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 583545 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1378924 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 1486913 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 1536441 19542102 ~ 19599101 (-) False rims2a
TU267728 other upstream 41694 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 41694 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 308585 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 332758 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 361505 21498408 ~ 21498832 (-) True G234621

Expression Profile