RNA id: TU267717


Basic Information

Item Value
RNA id TU267717
length 1537
lncRNA type read_through
GC content 0.48
exon number 6
gene id LOC110513123
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21168140 ~ 21172480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTAGTTGCCGATACTTCAAAGGTTATATGAGGTGAATTGTGCAACAGTtaaactctttttatttttaaatgtaccaCTTCATTTTCTGTTAGAGCATAACAGGTCATTTTACAGAGACTCTTGATGAGGTGGAGGTGAAGTGTTCTTTGGAGAACAATCGATTTACACTGTGTGAGTGCGAGAAGGGGAGAGGAATTCCGCTGAAGAGGGCAACCTTTTGCCCCTTCAAGTATCTGTCTGTCGCAGAGGCAGCTGCAATCCCATTGGATGTTCAGAGCCGCGGAGTGGACGTGGGGGTTGCTATTCTTCTgcagtcagccaatcagaaggTGTTGTTAACTCGACGGGCGTCCAGTCTCCGCATTTTCCCCAATGTGTGGGTTCCACCAGGTGGCCATGTGGAACTGGATGAGAGGCTCCTGGATGCTGGGCTGAGGGAGCTGAGGGAGGAGACAGGACTGAAGCTGGACCCTGGAGACGTCTCAGCTCAGCTGCTGGGGCTCTGGGAGTCAGTTTTCCCGCCCATGCTGAGCAGAGGGATGCCACAGAGGCACCATGTGGTCACCTACATGCTCCTAAACACCTCCCTCACACACCAGCAGCtccaggtgtctgtctgtctgcctgactgtccTGTTGGTCTCTGTCTGCCTGGTGTTATCATTAAAGGCACACAAagccaaatcaaagagaatgccTCTGACTCACTAAAGACCATCTTTATTCTAGGCCTCTCTGCGCCCCGAGCCCGCTGAGGTCAGTGGCTGTCTGTGGGTGGACGCCTCGCTGGTCAAGGCCATCGTATCCGCCGTGGACGGAGAGGAGGGTTCTGTGACACCGCTGGAGGGCGTGGCTCCAACCATAAGTGTATCGGAGGTCTCTCCGGAAGGTGTGCTCAGTGAGTCAGATTTGCCATTGTCTGTTTTGTGTAACCGGGCCCCGAATAGTGGAGAGGATGTGGAGCGGGTTAGCACTGGTACCAAATACGCCCTGGAGCTCTGGCTTAAGAACCTGGAGGGACAGGGGACCCGATGTTAACTGTCTTCCCTAAACCTGGATGTCTAGCCCTGTGATGAAGTGACTTCCTGGAGGATGAAATCACTTCAAGGAGTTTGCCTTAACCGGTGAAGGTCACCTAAAGTGAACTATCATCTTTCAAAAAAATCTTGTACATATTAACCAATAATGAactttgggtgaactatccctttaatatcaGCAGCAACACCTACAAGTCTTATATGGCTGTTTGAGGGCTTTGCATGAGCTATCAATTGTGTTGTGTGTAAGAACAGTTTTTATTGCAAGGGTGTTGTTGTTAGTGATGAAATGTTATGAACAAAGTGGATTTATACTGCAGATGCTTTTATGATCATTATATTCCATTTGCGCCTTCAAGCCACAAGATGGCAATGCATAGCCTACACAGTGATTTCACATTTGGAGACTAGTGTGAAACATCAGAATTCTGAGTTAAGTTTACATAATTATCTAgacttgtaaataagaatgtgttcttattaactgactcgcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267692 lncRNA downstream 31267 21135542 ~ 21136903 (-) True LOC110513075
TU267682 lncRNA downstream 40836 21127126 ~ 21127334 (-) True G234187
TU267674 lncRNA downstream 56709 21110939 ~ 21111461 (-) True G234179
TU267668 lncRNA downstream 65022 21102901 ~ 21103148 (-) True G234173
TU267666 lncRNA downstream 66854 21100779 ~ 21101316 (-) True G234171
TU267727 lncRNA upstream 4183 21174681 ~ 21175325 (-) True G234223
TU267768 lncRNA upstream 28272 21198770 ~ 21204030 (-) False LOC110513176
TU267769 lncRNA upstream 28272 21198770 ~ 21201609 (-) False LOC110513176
TU267771 lncRNA upstream 28272 21198770 ~ 21206057 (-) True LOC110513176
TU267802 lncRNA upstream 66361 21236859 ~ 21237538 (-) True dcst1
XM_021593124.2 mRNA downstream 15814 21136077 ~ 21152356 (-) False LOC110513075
XR_002471956.2 mRNA downstream 15814 21136077 ~ 21152356 (-) False LOC110513075
XR_002471957.2 mRNA downstream 15814 21136077 ~ 21152356 (-) False LOC110513075
XR_002471958.2 mRNA downstream 15814 21136077 ~ 21152356 (-) False LOC110513075
XR_002471955.2 mRNA downstream 15814 21136094 ~ 21152356 (-) False LOC110513075
XM_021593155.2 mRNA upstream 28267 21198765 ~ 21230066 (-) False LOC110513176
XM_021593156.2 mRNA upstream 28267 21198765 ~ 21230066 (-) False LOC110513176
XM_021593159.2 mRNA upstream 28267 21198765 ~ 21230066 (-) False LOC110513176
XM_036964648.1 mRNA upstream 60171 21230669 ~ 21239790 (-) False dcst1
XM_021593198.2 mRNA upstream 138346 21308844 ~ 21320007 (-) True LOC110513266
TU267325 other downstream 516474 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 616173 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1411552 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 1519541 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 1569069 19542102 ~ 19599101 (-) False rims2a
TU267728 other upstream 8099 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 8099 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 274990 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 299163 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 327910 21498408 ~ 21498832 (-) True G234621

Expression Profile