RNA id: TU267769


Basic Information

Item Value
RNA id TU267769
length 2703
lncRNA type sense_over
GC content 0.45
exon number 2
gene id LOC110513176
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21198765 ~ 21230066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTTAAACTAATTGCTTTTTTAAACTGAAGATCATTAGTTGATAATTGGAGTCGTGTGTTAGCTGTGGCTGGGGCAAAAGTGACAGTAATCAGGCCCCCAAGGACTGGAGTTGGTCTAGAGCCCTCAATCTTCAATTGTCTTGTCTCTGTTACCTAAACTCTGTGTGACGAGACGGCTATAATCAACAAAAATCATCCTGTGTCACACCTGATTGTATTATATGTTTCTATTGTTTTTCTTCAGGCCCTTGTACCACCCAAAAAACCACCAGCCCCCAGGAAGTCCTTGCCTTCGGACCCCCCGTCACATCCCACCCATCCTGGGTATGCTGCATATGGTGCCCCCGTGCAACATGGAGCGAGTATAACTTCAGTTACACCTATTGGCCCTCCTGTTGCAGCCATCCCTTCCAGACGTGCCCCTTTACCTCCAGTACGGACGTCACAACCCAGAAAACCTAACTCGACACCTCCGATTTAATCACCAAAGACCCTCAAAACCACTAGGATTCTCTTAAACCAGACAGCACGAATTGCACTGATTCAGCCAGGAGTTTTATTATGGAGACCCTTATAGGACGGCTCAGAACCCAGAAGTCTCCAAACGAAGGCTGCGTTTCACTCTCCCTGCCCCCCTAAACTATTTCCTGTTGCCTTCCTACTGAGAGACTGACAGGTTCCTTGGTTGGTTACCTGCCATGTTGGGACAGACTGGGACTCCGAGCAAAGCAGAGAAGGTCTGGAATGTTCAGTCAGGTTGATCCGTTGGCCATTGAGAAACTGAATGGATGTAGTTAAGTATCCATCAAAGATGTAACACTTCATGAAAActgtgtggcttttgacattaacTGACAATTACAAAAACGGATGTCAACACAGAGGATAAACTCAATCAAGATTAAAGGCCCAGTACTGGTGGGCCTACTTTATGGCACTAGCACATTTGAATATGCTCTGTGATGCTTCAGAATAGCTTATTACTCTTCAAATTATAGGTTGAAGCCCAAGTCATCCTCCCATTCTGACTGTGGCCACCATTTTGCAGTATTTTATTTTAAGTGACTTGGTTAATGCAGGCCTCAGGAAACAAGTCCAGACCACCTCTGGCTCTCTTTCTGGAATAAAGAAGCATATCAACACTTTCATTCACCGCAATGATTCCTTTGATCTCCATCACAATGGTGTCATTGAGGGGGAGGACCTTGCATGCAACCCTCTGACTAATGAGATGAAATGAGAATAGTGTCACAGAAACTTTAGCCGTTCTCGGTTGCAGAGCTGTACAACTAACTGCACAACTGTAGATACCAGAAAATTGGAACTTGCCTACTAATTCTAATTCTAATTCAACTATTTAAAAGCCAAAGAGATGGATCTCTGGAGAAGTGAGGGGGGAAGTAGATTGAACTTTGTGAAATGCGAGGGCACTTCTCGAAGACTGACCTACGTTGTGACAGATCTACGTTGTGACAGATCGGTTGCCTTTTTTGTACCTTTCAGTTGTGCCGCACCAGTTTTGTCCGAAATGAGTTAAGTGCACTCCTAGAATGTCTTTACATATTCAGGTGAattaaaaccaagccatgggatTCACTTCTTAAACTGGGGAAATGCACAGACTGAATGTACAAAAAAACTATAGGctcacactttacattaagtcACAGCAATGCCATGTAGTTACACCAAATATAATTTTCTGTCTTATTTCATGTAACTAGATTGGTAATTAATGtcaattttttttgttgtcactTATCCTTTTAGTGCAATTCAAGCATTGTTATGTTCCTTCTCTGCAGTTTGAGTAACTACATGGTATAAGGGCAACTTAATATAAAGTGTTCTGAGGGTCTGGAATAAACCACAATATAAGTATTACTACTCCTGAAGTGGTGGGCCACCTGTACAGGGGCTGTATGTCAACAGGCAACAGTATTGCTTTTGCCTGCATGTCATGAAAGTGTATTTCATTTCTAGTGAATGATTGTTGTTTTCTATGTCAAAACGTCTGTTAGTCTTCTATTTAATATTGTTTAAAGCGATGAATTCCAAGCCTTATGAGTTTTAAGTTAATAACATACACATATGAAGACCAAGTGATTGAATTTGAAAGCACTCCACGGCAACATGGCTAACTGTGTTTATACAGCAAATAGATGATGTTGTGTATCAATGATGGCTTATTTAGTCAAAGAGAACAGCTAGCAGGTATGATACTTGAAATTGGTAACTGATACTCTTCATCCTGATTTGAAATCTGCCAGTACTGGTATGCAATATACATTACAAGCATTTCAGATCATTTGACTGTTAATTATTTTGATTAATTACTAAAGGTGTCAAGGTTGATTTATGAAAACCTCTAAATGGCGCAGGCATGTGATTATGCCTTCCATCGGTCCATTTGATTTAGAATATGTAAATGTCCTTTTTTGACCTTCTACTGACAATGCTCTGTTCCAATGTTCTAAACACACTCTCCCTTTGGTTCTATTCATATGTCTTACATTTCTAATACGTCTGATTATCAGTATGAGAACACTCAGATGTAACATGAATTGTTACGAATTTTGCTCAATGCAATTATGAGATTGTCTTTtcaggagactgttctactttgACCTCTGTCTGCAGTTTTCCTACTGTCTCAATTGAGACATTAACTGCTGCTGAGGGAAATAAAACAGACTGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267727 lncRNA downstream 23445 21174681 ~ 21175325 (-) True G234223
TU267717 lncRNA downstream 28272 21168170 ~ 21170498 (-) True LOC110513123
TU267692 lncRNA downstream 61867 21135542 ~ 21136903 (-) True LOC110513075
TU267682 lncRNA downstream 71436 21127126 ~ 21127334 (-) True G234187
TU267674 lncRNA downstream 87309 21110939 ~ 21111461 (-) True G234179
TU267802 lncRNA upstream 35250 21236859 ~ 21237538 (-) True dcst1
TU267832 lncRNA upstream 57297 21258906 ~ 21259200 (-) True G234313
TU267858 lncRNA upstream 68242 21269851 ~ 21270146 (-) True G234332
TU267910 lncRNA upstream 91266 21292875 ~ 21293076 (-) True G234378
TU267919 lncRNA upstream 104479 21306088 ~ 21306323 (-) True G234387
XM_036971752.1 mRNA downstream 26290 21168140 ~ 21172480 (-) False LOC110513123
XM_036971762.1 mRNA downstream 26292 21168140 ~ 21172478 (-) False LOC110513123
XM_036971768.1 mRNA downstream 26292 21168140 ~ 21172478 (-) False LOC110513123
XR_002471958.2 mRNA downstream 46414 21136077 ~ 21152356 (-) False LOC110513075
XM_036964648.1 mRNA upstream 29060 21230669 ~ 21239790 (-) False dcst1
XM_021593198.2 mRNA upstream 107235 21308844 ~ 21320007 (-) True LOC110513266
XM_036971863.1 mRNA upstream 118583 21320192 ~ 21331510 (-) False LOC110503878
XM_036971862.1 mRNA upstream 118583 21320192 ~ 21331511 (-) False LOC110503878
XM_036971851.1 mRNA upstream 118583 21320192 ~ 21331512 (-) False LOC110503878
TU267728 other downstream 18088 21178597 ~ 21180682 (-) False G234224
TU267729 other downstream 18673 21178597 ~ 21180097 (-) True G234224
TU267325 other downstream 547074 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 646773 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1442152 19756204 ~ 19756618 (-) True G233052
TU268086 other upstream 243879 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 268052 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 296799 21498408 ~ 21498832 (-) True G234621
TU268723 other upstream 537236 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 542842 21744451 ~ 21755501 (-) True LOC118946878

Expression Profile