RNA id: XM_036964648.1


Basic Information

Item Value
RNA id XM_036964648.1
length 2091
RNA type mRNA
GC content 0.53
exon number 16
gene id dcst1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21230669 ~ 21239790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTTCATTTGAGTGAACTCCGAAGACTCAAAAAAGCACCACATTCCACCTTGGAGAGGATCAGTAGGTGGGTTCTCCCAGATTTTGCCCACCGGTTCCTCTTTAGTCGGTCACAGGAGTTCCCAGTTGCTCGTTTCTTCCTGGGAGCATTATTTGGTGCTCTCAGCGGTGCAGGTTTATTTCTGGGTCTCTTCCACAATGTCTCAATGACCAGTGTAAACAGGCTCTTAGCAGGATATGCTTTTGTTGcTGTATGTATTCTGGGTGGGGCGTTTTCCTCCTACTTTCGCTGCTCGGTCCTCCTGATCTTTCCCAGCATGCTCGGCTCTCGTGGCAGGGCGTACCTCATGCTGTTTGTCCTCTACGGCCTGTATAGGGGCCCAATCGCTAACATCCACCGTAATGTCCAGGATGTGGCCTTCTCTATGGGGTGCAACATCGAGCTCCAGATCAAACACAGCAAGGTCATGTGGAGGGAGGTGATGGAGCCCTTCATGCAGGTGGTGCAGGGTATTGTGGAGGATAATGGGGAGTTCCAGGACGAGGCTAAGAGTGTGAGCAGGAAGTTTCAGAGCATCAGGGATGAGGTCATGGGGCAGTATGGCTATGACTCCATGGAACAGGGCCCTGTTGCTGCTGGCAACAGCACCCAGGATTTGTATGCAGCAAAGACGATGATGCGATGTGACAATGTGGTGGAGCAGGGGATAGAGCGCTGTCGGGAGTGGTTTGAGGTCAAGTGGCAGGACTGCATGGATGCCATCAAAGCCCCAGTCATCAACCACATCCTGTGTGTGTCCATGAGATTCCACTTCCTCTGTGACATCATGAGAGTCATGAAGCCCTGGTGCAGGGAGGATATCCCAGTGGAAGGGAACTTTGGGCAAACATTCGACAAGCTCAACTTCTCCATTGACGCACTGTCCAGAGAATTCAGCACTAACGTGGTGCTGCAGGTACAGCCCAACTCCTCTGTCTGCTCTCACgaggaggagcagcagtcTGTGTTCGGTGTGTCAGCCCTACGGGAAGATTTCACAGAGGGTCTGAGTAAAGCCTTCGAGGAGACCAAGGTCATTCTGGACCAGTTTCTGGGCCTCatccagctcctcctctcctgcacCTTCATCACCATCTTCACCTCAGCGTTTGGCTATGCGAGGCAGTATACACAAGACATTCGCTTTGacaacatctacatcaccacctacTTCAGACAGATTGATGCCAGGAGAAAGAGAGCATTGACATTTCAGGACAAACGTTATCTGTTACCTTTGAAGAAAGCTGAGCGGGGCCTTTTCATCAACCCTCGCAGCCTGTCCATACATCCCAGTGAGCTTAAACTAGTGATGGCGGGCCTGCTGCAGGTAGTCTCTCtggctgtgtttgtctgtgtgctaTTGGCTGTCGACATGGTCCTCCACCACATCTTTGACATCATCCGCAGACACACTTTCACAAAGTTCTCCCTCACCAGCAGCCACCACATAGACATCAACGTGGGAGGACAGTCCATGATGGCCAAGCTCCTGAGGAAGACCATCGGGGCCTTCAACACCTCCTCTAACCTGGATATGCAGTCTAGTAACCAGCACTGTCTGCCCCAGCCGAGGGCTCTCACCATAGAGGACTACCTGTGGAGTTTCGTGCCCCTCTTGATGATGGCGCTGATGTGCTGCCTGCAGGTGTACAGCAACCGCCTGCGCAGGGTCATCGCTGCCTTCTACTTCCCCAAGCGGGAGAAGAGGCGCGCTCTGTTCCTTTATAACCTGCAGATCCAGAGGCGCATCTCATACACCAAAAGGCAACGGACACGACTCATGCAGCTAGGAACAGGAGAGAAAACAgtgttgtctggtgtgttgtCTAGACTGGAGAGGCTGGGCTGCAGGCTGCggtggtgctgtgtgtgtggggagaggcagaggggtgACCGGGCTGTGGAGTGCACAGTCCCAGGCTGCCAGGCGGCCTACTGTCCCCAGTGCTGGAGGGACCTGGGCAGGATCTGTTACGCCTGTGTCCCCACTAGTAACTGGGATCCAGTAGAAAGCTGTTCAGACACAGACATGTACTATGTCCATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267771 lncRNA downstream 24612 21198770 ~ 21206057 (-) True LOC110513176
TU267768 lncRNA downstream 26639 21198770 ~ 21204030 (-) False LOC110513176
TU267769 lncRNA downstream 29060 21198770 ~ 21201609 (-) False LOC110513176
TU267727 lncRNA downstream 55344 21174681 ~ 21175325 (-) True G234223
TU267717 lncRNA downstream 60171 21168170 ~ 21170498 (-) True LOC110513123
TU267832 lncRNA upstream 19116 21258906 ~ 21259200 (-) True G234313
TU267858 lncRNA upstream 30061 21269851 ~ 21270146 (-) True G234332
TU267910 lncRNA upstream 53085 21292875 ~ 21293076 (-) True G234378
TU267919 lncRNA upstream 66298 21306088 ~ 21306323 (-) True G234387
TU267904 lncRNA upstream 80426 21320216 ~ 21322542 (-) False LOC110503878
XM_021593155.2 mRNA downstream 603 21198765 ~ 21230066 (-) False LOC110513176
XM_021593156.2 mRNA downstream 603 21198765 ~ 21230066 (-) False LOC110513176
XM_021593159.2 mRNA downstream 603 21198765 ~ 21230066 (-) False LOC110513176
XM_036971752.1 mRNA downstream 58189 21168140 ~ 21172480 (-) False LOC110513123
XM_036971762.1 mRNA downstream 58191 21168140 ~ 21172478 (-) False LOC110513123
XM_021593198.2 mRNA upstream 69054 21308844 ~ 21320007 (-) True LOC110513266
XM_036971863.1 mRNA upstream 80402 21320192 ~ 21331510 (-) False LOC110503878
XM_036971862.1 mRNA upstream 80402 21320192 ~ 21331511 (-) False LOC110503878
XM_036971851.1 mRNA upstream 80402 21320192 ~ 21331512 (-) False LOC110503878
XM_036971855.1 mRNA upstream 80402 21320192 ~ 21331512 (-) False LOC110503878
TU267728 other downstream 49987 21178597 ~ 21180682 (-) False G234224
TU267729 other downstream 50572 21178597 ~ 21180097 (-) True G234224
TU267325 other downstream 578973 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 678672 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1474051 19756204 ~ 19756618 (-) True G233052
TU268086 other upstream 205698 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 229871 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 258618 21498408 ~ 21498832 (-) True G234621
TU268723 other upstream 499055 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 504661 21744451 ~ 21755501 (-) True LOC118946878

Expression Profile