RNA id: TU267802



Basic Information


Item Value
RNA id TU267802
length 308
lncRNA type sense_over
GC content 0.38
exon number 2
gene id dcst1
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21230669 ~ 21239790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGAGACCAAGGTCATTCTGGACCAGTTTCTGGGCCTCatccagctcctcctctcctgcacCTTCATCACCATCTTCACCTCAGCGTTTGGCTATGCGAGGCAGTATACACAAGACATTCGCTTTGacaacatctacatcaccacctacTTCAGACAGATTGATGCCAGGAGAAAGAGAGCAGTAAGCAAACAAAAGATAACGTATATATATTTGGTCAGTGAACCTAAAATGTTTAATTTGGCTCTAttctccagcattttggatttgagatcaaatgtcaccttttatttgaggatattttaatac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU267771 lncRNA downstream 30802 21198770 ~ 21206057 (-) True LOC110513176
TU267768 lncRNA downstream 32829 21198770 ~ 21204030 (-) False LOC110513176
TU267769 lncRNA downstream 35250 21198770 ~ 21201609 (-) False LOC110513176
TU267727 lncRNA downstream 61534 21174681 ~ 21175325 (-) True G234223
TU267717 lncRNA downstream 66361 21168170 ~ 21170498 (-) True LOC110513123
TU267832 lncRNA upstream 21368 21258906 ~ 21259200 (-) True G234313
TU267858 lncRNA upstream 32313 21269851 ~ 21270146 (-) True G234332
TU267910 lncRNA upstream 55337 21292875 ~ 21293076 (-) True G234378
TU267919 lncRNA upstream 68550 21306088 ~ 21306323 (-) True G234387
TU267904 lncRNA upstream 82678 21320216 ~ 21322542 (-) False LOC110503878
XM_021593155.2 mRNA downstream 6793 21198765 ~ 21230066 (-) False LOC110513176
XM_021593156.2 mRNA downstream 6793 21198765 ~ 21230066 (-) False LOC110513176
XM_021593159.2 mRNA downstream 6793 21198765 ~ 21230066 (-) False LOC110513176
XM_036971752.1 mRNA downstream 64379 21168140 ~ 21172480 (-) False LOC110513123
XM_036971762.1 mRNA downstream 64381 21168140 ~ 21172478 (-) False LOC110513123
XM_021593198.2 mRNA upstream 71306 21308844 ~ 21320007 (-) True LOC110513266
XM_036971863.1 mRNA upstream 82654 21320192 ~ 21331510 (-) False LOC110503878
XM_036971862.1 mRNA upstream 82654 21320192 ~ 21331511 (-) False LOC110503878
XM_036971851.1 mRNA upstream 82654 21320192 ~ 21331512 (-) False LOC110503878
XM_036971855.1 mRNA upstream 82654 21320192 ~ 21331512 (-) False LOC110503878
TU267728 other downstream 56177 21178597 ~ 21180682 (-) False G234224
TU267729 other downstream 56762 21178597 ~ 21180097 (-) True G234224
TU267325 other downstream 585163 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 684862 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1480241 19756204 ~ 19756618 (-) True G233052
TU268086 other upstream 207950 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 232123 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 260870 21498408 ~ 21498832 (-) True G234621
TU268723 other upstream 501307 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 506913 21744451 ~ 21755501 (-) True LOC118946878

Expression Profile