RNA id: XM_021593198.2


Basic Information

Item Value
RNA id XM_021593198.2
length 4928
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110513266
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21308844 ~ 21320007 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCCCCACGCAGCATCCGAGATATAATAGCATCATTGAGTTTGGCGTATAGAGAGCGAATAGACCATACGAAAAGAGGAAGACAATCATTATTTATTAACCTGTGAGCTCATTTACTGGAATAGTTGGTTGAAGTATCGTTACTCATTCTCTATGGATATAAAATAGGGACAAATCAGCTTTATATTCTTTAATTTACCCTTTTTATCTGGGCTGCCAGTAAAGCATCCTGCGTTAATTCTCAAAATGGCTGAGATTACAGAATTACGACCTGCATATGACATGTCACCGGTGCTGGCTGGTTTTATCGGTGCAGCGGCTCTGGTGGTTGCCGTGGTGATCCTGGTTCTCCTGTGGTCCTTCTGCCAGCGTCGCAACCTCCGGGTGATGGGCCGGTACAAGCTCCATGGTGATCAGTACACCGACTCGGCTGAAGACCCGCCTTACAAGTTCATCCACATGCTGAAGGGCATCAGTATCTACCCAGAGTCCCTCAGCAGCAGCAAGAGGATAGTACGGGTGGCCAGACGTGCTGGgtggcagggggagagagacagagagaggggtggtggccGCGGGATGGTCCTGGTGGATGCTGAGAACAACATCCTGGATGCTCCTACCCATCTCCAGATGAGCCACCTGGTGCCCCCTGCTGGCCAGCCCAGAATGGAGGCGGCACTGCCCGTCAGGGCCGACTACTGCTGCCTGGATAGCTCAGCTACCAGTAGCGAAAACAGCAGCAAGACTGTTTCACCTTTCACCCCCGCGTCCTCTGACCCAGAATCAGAGCCTGAAACCAGCCTGGGCTCCCTCAGCCTGGCTTTAGACTACAACTTCCCTAAGAAGGCCTTGGTGGTGACCATCGTTGGAGCCCATGGCCTGCCTGCAGTAGACGAACAGAGGAACAGCTCCGACCCCTACGTGAAGATGACCATCCTCCCTGAGAAGAAGCACCGGGTGAAGACCAGGGTCCTGAGGAAGACACTGGAGCCGGTGTTTGACGAGACGTTCACGTTCTATGGAGTGGCCTACAGCTCGTTGCCCGAGCTCACGCTGCACTTCCTGGTGCTCAGCTTCGACCGCTTCGCCCGAGATGATGTCATAGGAGAGGTGGTGGTCCCGCTGACAGAGTTGGAACCCAGCACGGGGCGGGTGCACATCACCCAGCAAATCAGCAAGAGGAACATGCAGTGCGAGAGCCGTGGGGAGCTGTTGGTGTCTCTGTCCTACCAGCCTGTCTCCCACCGCCTCAGTGTGGTGGTGCTGAAGGCCAAACACCTGCCCAAGATGGACATCTCTGGCCTGTCTGGAAACCCATATGTGAAGGTCAATGTGTTCTACGGACGCAAGCGCATCGCCAAGAAAAAGACGCACGTGAAGAAGTGCACGTTAAACCCCGTCTTCAACGAGTCCTTCATCTACGACGTGCCCCCCGAGCTGCTCCCTGAGATCTCCGTGGAGTTTGTGGTGGTCGACTTTGACCGTACCACTAAGAACGAGGTGGTGGGGCGCCTGCCCCTCGGCCTGCACAGCCCCTGTCCCTCTGGCGCCGCCCACTGGCGGGAAGTCTGCGAAAACCCCCGTCGGCAGATCTCAAAGTGGCACAACCTCAGTGAATACTAGCTCCTCACACCACCTAATGCATATAGTTCTACCTGTGtatagggggaggtggaggaggggaagagagggactTCTTGCCGAGAGAGTGGCTTTTCCCCATGCCATACATTCTCTTGTGAATAATACCAACAAAAAATGAACAACATTCCTGGTGGGACTTGTACAGTGGACTTTACAGTGGTTAAGGTTCAACTACAGGATCGAATTAAAGTAACAAACATGCATACAGATaaacatacatatatataaccCACACCACTACAGAATTATAGAGACACTCAGTCTCAGCATTTGGGTACGAGTAATGAAAATAAAAAAGTTTGTTAACCAAAGTCTGACCAGGATCACACATTCAAGGCTGTTATTATTGTCTGGCCATGTTGTATGAAGTTTAGGCGATGGGAGGATACATGCAAATGCTTAAAAAATAAAGAATTGTCAGACTTCAAAATCCTCCCCTTGCCAATATTGTACTTCATTCATCGCATGTCTGAATTAAACAGAaatatcatcaaatcaaatgtaggAAGGAAACAGAAGTATTGCTTATATTGATAGTGagaatttttttctctctctaaagGTAGCAACGAATAGGACAGCTAGAAAATTCTACCCATGAAATGTTTTGGGGCCTAACTGTTGTCGTTCAGTGGCATTACCATATTTGATGACAAGCTCTGTATCTAACATGAAAACCATCAAGGTTTCAAACCAATTGATTCTTTGTTGTTAAGACAAATGTGATTTCACtgcaaatatatttattttgggTTCATTTTTAGAACAAATTCGGTCTGAAAATATGAATGTAATAAACAACCAAAACATTATTACATGGATACATGTagcgtttcgctacactcgcattaacatctgctaaccatgtgtatgtcacaaatataatttgatttgatttgatttaacatgtGATCACAAGAAATATGACATCTTCTCATACTGTGGCATTGAAAAAGCATTTACCACAGTATAAGCAAATTACTGAACTATCACTGCAGCAGGTTAGTCTTAGTACTGTAATAACCAGGTAATAACACATGCTAGTTAGGAGCTTGTAGTGCCAGATGTTTTTTGAAAGTCACTGATATTATTGTGAATAATGGTTTTGACATGAAGAGTTGTAAAGGGTCATGTTTTGCTGTGTGGTTTCCAAAAGGTTTATACAGAATATTCCAGATATATTTTGGCCTTTGCTGCCATGCTCATCTTTTAGGACTCGATTCAATCCGAATCACCGAAGTTCTGCGCTATAGCGTGCTTGAAATGTAAACGTAATTTTTTATTGAGCTgtcatatgcagcgtttaccgtgaatgcagtcttcGCGAACTTGGGAACATTGGCTttacattgcctttacatttcaatagCGCTGAACTTGAGCGATACGGATTAAATCGAGCCCTTTGTGTATTTTTGTCTCTTTCATTTGGCTAATTTCAAGATTATATTGTATAAAAGAACAGTACTTTATATCTTGAAGGCAACACTTTTCTATAGTGAATAGCCTCACAGGTTGAAgctcctgtatgtgtgtgtgtgtggagactgCAGAGCCCAGGTGCACTGTTTAGAATAATATAAGTGGTGATGGGGTTCAGAGCAGGACATGGCAGTGGGGTGGCTACTGCTAACTTCTGGCTTGGCTAGGCTTTATGACCAGAAGGACGAGACACAGGTGGGCAAACCCCCACACCTCTACTATCAccaacctctccatcctctcttcctcctctttttctcccgctctctcactctctctgacccTCCTTCGCACTTtctttctagctctctctttACAGTCCCTTATTTCCTCAATCTCCTTCGTTCTcccgtctcctctctctaactctttctTTGCACCTTCTTTATTTGGATCACTAATATCTCAAATTCCTTTTAATGCTTCATTCCTCATAATGAGAGAAGTCACAGTATTTGACATATTAGTGAACCCATCATAACACCTATCACACCCTGTGAGGATTTGGCTGTATGACTGATGCTCTGTCATCATTGTACATCGTaggtcaggggtgtcaaactcattccatggagggcctagtgtctgcaggttttttggtttttcctttcaatgaAGCCCTAGACAACAATTagtggggagttccttactaattagggaccataattcatcaatcaagtacaagggaggacttgcagacactcggccctccgtggaatgagtttgacacctgtgctGTAGGCCTACTCAGTGGAGACATGGGGAGTCTAGCTGCAATGGCTTTACATCACACTGTGTAACATTTACTGCAGTGCAGTCTGGCAAATTGACTGTGTGAAACTCTGGGAGAACAGTAATCTCAGTGAAGCCAAGGTGAAAATACTTAAGTAAGACTGCAGGTTTGTGTCTTGACAGGGCAAGGGGAAAGCATAAAATTGTGTTGCAATACATATGAGCTGCCTTGTTTGCTTTTGGCAGCAAACTCCTGCGATCAGAACCCCCACCATTTTGACTGTCTAtagccccgtttatacctggtgctaacatgggTCCTTAGTCCTGATCTTGtctacattctgattgtgcccacatttccaGAAGTGTGTCTACACATGGTATTAAAATGAGTCTGTTATCTGTCCACTGTGTCTGCATTGTGACCAGAGTTCCTGGTCCCTTCCTTTATGCAAATCATGTCACAGCTataatatttgtatatatatttactgtaagacacatattgatgtaATCAGCCTCCTGTCACTGATTTTAGAGGCCGGaataatgatgatttaaatggtttttctGTCCAGATCTGTCTACACTTGTAAGATGTCTAGACACAAAAAGATCACAATGagatcacaatgtgtcttttGATTGTCAacacctgtctaaaaatgtgggcacaatcagactgtggacaagatcaggacaaaagACGCAAGTTAGAACAAGGTATAAAAGGGGCTTACTTCACCTTGTCTCCCCACCTTCGACCTTCAGTGTAGCTACTTCCTTTGTTGAAATATCCTTGTTAACTAATTTGGAATAAAATATGAAACGTAATGTAAACAAACTGTAATAATGACTGATCGTGGACTGGTACAAATGATTATTTCAAGGTATCTTCTATCCAAATACATGGAGTTAAACTATGTAATGAAATACTTGCCAGTAATGCAAACGGTGTCTAAAACGTACATTTTCCTATGTGCTGAGTATATTACGCGGATGCTaacttgtgtgttttttttcattaACAGTCATTCAACGTGCAAATAAAAAGTTATACTCCA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19911 SYT11; synaptotagmin-11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267919 lncRNA downstream 2521 21306088 ~ 21306323 (-) True G234387
TU267910 lncRNA downstream 15768 21292875 ~ 21293076 (-) True G234378
TU267858 lncRNA downstream 38698 21269851 ~ 21270146 (-) True G234332
TU267832 lncRNA downstream 49644 21258906 ~ 21259200 (-) True G234313
TU267802 lncRNA downstream 71306 21236859 ~ 21237538 (-) True dcst1
TU267904 lncRNA upstream 209 21320216 ~ 21322542 (-) False LOC110503878
TU267925 lncRNA upstream 10988 21330995 ~ 21331409 (-) True LOC110503878
TU267928 lncRNA upstream 15529 21335536 ~ 21335999 (-) True G234396
TU267929 lncRNA upstream 16315 21336322 ~ 21336583 (-) True G234397
TU267930 lncRNA upstream 16695 21336702 ~ 21337160 (-) True G234398
XM_036964648.1 mRNA downstream 69054 21230669 ~ 21239790 (-) False dcst1
XM_021593155.2 mRNA downstream 78778 21198765 ~ 21230066 (-) False LOC110513176
XM_021593156.2 mRNA downstream 78778 21198765 ~ 21230066 (-) False LOC110513176
XM_021593159.2 mRNA downstream 78778 21198765 ~ 21230066 (-) False LOC110513176
XM_036971752.1 mRNA downstream 136364 21168140 ~ 21172480 (-) False LOC110513123
XM_036971863.1 mRNA upstream 185 21320192 ~ 21331510 (-) False LOC110503878
XM_036971862.1 mRNA upstream 185 21320192 ~ 21331511 (-) False LOC110503878
XM_036971851.1 mRNA upstream 185 21320192 ~ 21331512 (-) False LOC110503878
XM_036971855.1 mRNA upstream 185 21320192 ~ 21331512 (-) False LOC110503878
LOC110513307 mRNA upstream 55817 21375824 ~ 21388805 (-) False LOC110513307
TU267728 other downstream 128162 21178597 ~ 21180682 (-) False G234224
TU267729 other downstream 128747 21178597 ~ 21180097 (-) True G234224
TU267325 other downstream 657148 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 756847 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1552226 19756204 ~ 19756618 (-) True G233052
TU268086 other upstream 125481 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 149654 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 178401 21498408 ~ 21498832 (-) True G234621
TU268723 other upstream 418838 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 424444 21744451 ~ 21755501 (-) True LOC118946878

Expression Profile