RNA id: XM_036971855.1


Basic Information

Item Value
RNA id XM_036971855.1
length 5317
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110503878
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21320192 ~ 21331512 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACGACATATGCCTATACTGCTATCTGGCAGTTGCCCTCCAGCGGAAATGGCCGTCAATGACAAGCCCTTTGTAACCCGGAATCAGGTAGAGGATTCAGGACCACACCGCACGATTTGATGGACAGACAACACTATTGAAATTCACAAGAGTACTTGTCCCTGTACCACCTCTGGGTAGCTAAGAAAACCATATGGGTTTGTTGAGCATACAGggtggcgggtagcctagtggttagaggcgagCCAGAAACTGGAAAAAAATGAAACCTTTATAAATTGTGTCTTTTTGGAGTGGTTGGGTTAAAAGCGGAAGTCAAATTTCAGTTGCATAATTTACCGATAAAATCATGTTAATCTTAAAAATTGCGATGAGTGTTGGCGGAGTGTACCATCGAGTCACTCACTATCAGTCGACACTTGAAAAATGTCCATTCGTTAATGCTTACtttgtacctatgtttgtcctgtGTATCTGCGTTTTTTTATTTGGGTGCTGCAATCAGTAGTTTTAGTTAGACACATCATTTGTCCTGTGCCGCAATCCGTAGTGTTTGTTAAAAATGTAATTCTACATACGGTTGTTAGCTATCTGGAAACGGCGTCCAGAGTTTGGTCCCACAGGCACTGCGTTTTTCTACACAAGAGAGGAGATCCAATGGAGTTGGTGAAGCGAGAATGGGCGGGGTAATCTCACCGGcgccactttaaaaaaaaatcagccgCACAGACCTGTCAATCAACAAGCAACCCAGACAGACATCAGCCCCCGGTGGCTGGCTGTTAGCTGTAAGAGAGCAGCGTCATAGTTGGCGGAGAGCCCCACCGTCTGGAATGAAACGGGCGCAGCGATTGGCTCGAAATTTTGCCCGAGACAACTCACGCGTacgatgttctctctctccccttttgtTATTGCAAGCAAACTAGAGAAGAGTCGAGGAAGCAGCAGGATGAacgaagggagcgagagagggtgaTAGACTGACAACAGTCGAGACAGTCAGCtccacagagagaggggtaaaggggGAAATACATTTGGAATACTGCTTCAGAGCTCCCTCTACATATTTGTCTAGTTCTCCTGTTGATTTGGAGATGTCAGTGAACCCCCCCAACAGCAACGATGCCTGCCTGAGCATCGTGCACAGCCTCATGTGCCACCGACAGGGCGGCGAGAACGAGGGCTTTGCCAAGCGTGCCATAGAGAGCCTGGTAAAGAAGCTGAAGGAGAAGAAGGACGAGCTGGACTCGCTCATCACCGCCATCACCACCAACGGAGTTCACCCCAGCAAGTGTGTCACCATCCAGAGGACGCTTGATGGACGCCTGCAGGTAGCTGGGAGGAAAGGGTTCCCCCATGTGATCTACGCTAGGCTCTGGCGCTGGCCAGACCTCCACAAGAATGAACTGAAGCACGTCAAGTTCTGCCAGTTCGCCTTTGACCTCAAGTATGACAACGTGTGTGTCAACCCCTACCACTACGAGAGAGTGGTATCGCCAGGCATTGTTGGTCTCAGCATTCAAAATGCAGGTGAGGAGGAAAACACTATTTTCAGCATCATCAAACATCATCAAAATGGTCGGCTGATCAAAGAGGAGTACATCCATGACTGTTATGAGATGGACCTCCCCTCCAGGATGCCCCCCCAGCCCGAGCACTACAAccagcccctcccccctctgcaGATGCCCCCCGAGCCGCCCCGCGCCCCATCCTCCGTCAACCTCTACCCCAGCATGCCCCTCTCTCCGCCAGTGAGCAGCTCCATGATGGGTCCCATGTCTGGGGGCCACGGCGAGGGCCTGCTCCAGATCGCCTCTCCCCAGATCCAGGGCATTCCCCAGACgccaccccccaccacccccacacACGGACCACCCCCCCAGCCCCCTACCCCTCACAGCCAGAGTGACTACAGCAGCagctccaaacacacacagacacagagctcCTATCACACAACCTGGACAGGCACCAGCACGGCCTCCTATACCCCTGTAGGACCCCAGCAGAATGGGCGTGGCCACCAGCAACCACCACTGCACCACCCCAACCACTTCTGGTCTCAGCAACATCACAGCACACCCGCCTTTCCTCAGCCAGTCTCCAACCATCCAGGTCCAGAGTTCTGGTGCTCCATCTCCTACTTTGAGATGGACATCCAGGTTGGGGAGATGTTCAAGGTCCTGGCTAACTGCCCCGTGGTGACAGTGGACGGATACGTGGACCCCTCGGGGGGCGACCGCTTCTGTCTGGGCCAGCTCAGCAACGTGCACCGCACCGACGCCAGCGAAAGAGCCAGGTTGCACATTGGGAAGGGGGTGCAGTTGGAGTGTCGTGGTGAGGGGGATGTGTGGATGCGTTGCCTTAGCGACCATGCAGTGTTCGTACAGAGCTACTACCTGGACCGGGAGGCGGGGCGAGCCCCGGGAGACGCAGTTCACAAGATCTACCCTGGGGCCTACATGAAGGTGTTTGACCTGCGTCAGTGCCACAGGCAGATGCAGCAGCAGGCAGCCACGGCCCAGGCTGCAGCAGCAGCACAGGCTGCAGCAGTGGCAGGCAACATCCCAGGGCCTGGCAGTGTGGGGGGAATCGCCCCGGCAGTCAGTCTGTCGGCGGCAGCCGGGATAGGTGTGGACGACCTGCGGCGGCTGTGTATCCTGAGGCTCAGCTTTGTGAAGGGCTGGGGGCCCGACTACCCTCGGCAGAGCATCAAGCACACCCCCTGCTGGGTGGAGGTCCACCTGCACCGCGCCCTGCAGCTGCTGGATGAGGTGCTGCACACTATGCCTCTGGCTGACCTAGGAGGACATGGACATGTCAactaagcagtgtgtgtgtgggtgtatgtgagagagaggtggcggTGTCTCAGTTGCTTGGTTTGGATGATAACCTTCATGAACACTATAGTACGTTTTGGATTGGATACCTTTTTCCTCAGCACCTGAAACAAAGACTGTAGACTTTGATAGAAACTTATTGAACTTCTATCGAAAAGGTATTTTAATGCTTTTATATATTTTCCTGTTTGAATCGCCTGATTTTCCTGAAGCAGTTTAGACTGCAAAATGTACTTGCTCAACAGCCAATCTTTTCACAGAGACTGGAACTTGCACTAAAGGCATCAATGCTTTTTAGTAGTGGAAACTAGCCTCGCACCGCCAATGACCTGGTAACCTGCCTGGATAAAACACTTTGGGAATTGTTCAGAAAGTTAGAATGATAGCACATGTGCTGCAGTGGATTCTCACTTAAGCAGTGTTGGAATGATGCCTTGATTACAGGGCAGCAGACTCAGACAGGTATATTGCATCTGGAGAATGCTGCTGTCCTTTAACTGCCTTCAGTAGGGTCTGTTAGTTATTCAGGGAGAAATTGAAACAATAGTCACCACAATCTCCATCAACCTTTTCTCTTATCAGTATTTTTCATTAACCTGCATCATTTGACTCAGttatatttatactgaacaaaaatataacgcaacatgtaaagtgttggtcccgtgtttcatgaaatcccagaatttttccatatgcacaaaaagcttatttatctcaaattttgtgcacaaatttgtttacattaatGTTGGTGGGCATTTtagcctttgtcaagataatccatccatctaagaggtgtggcatatcaagaagctgattggacagcatgatcattacacaggtgcaccttgtgctgaggacaatgaaaggacactctaaaatgtgcagttgtcacacaacacaatgccacagatgtctcaagttttgagggagtgtgcaattgtcatgataactgcaggaatgtccaccagagctgttgccagagaattcaatTATCTGCCATAAGcaacctccaatgttgttttcgagaatttggcagtacgtccaaccagcctcacaagcGCAGTTcgcatgtaaccacgccagcccaggacctccacatccggcttcttcacctgcaggatatTCTGGGAGTggggtatttctgtctgtaataaagtcctttttgtggggaaaaaaaacaattctgaTTGTCTGGGTCTGGCTTCCCATTGGTTGAGCCTGGCTCtgaagtgggtgggcctatgtgctcccatggctgctcccctgcccagtcatgtgaaatccatagattagggcctaatgaatttatttcaattgactgatttccttatatgaactgtggctcagaaaaatatttgaaattgttgcatgttgcctttatatttgtgttcagtatagctaccaaaaacaagaaatggaatATCAAGAATCTCCTCATTGATTATATTTATTGATGGAAGGTTTTACACAGTATTTGTAACGTTTTATTCAGTCAGACCAAAGTTGTCAGAAAGTGAAAGATTTTTCACTGCTATTTTATGGCCATAAAACCTTTGCTGAATGTGCCTATCTTCATTTTGTGTCCTGCCTTTGTTCAACCAAAGCATGTATTTGTGTTGATGTATGCCAAGATATGCCTTTAACTAAAGTACTTCTAGGCCTAATTAAAGAATAGGTAATTCATTAATTAAATTGGTGCCTTAATTTTGAAGTACTGACAAAGATTACAAACCCCACAGAAAAAAACGGCCTTCATTTGTTGGTTTTCTCAGTACATTCCTGCTGCAATGCGCCTCTTGTCAGTATCTACTGCAACTTACGATTGTGTTTTAGTAAAGTGGGAAAACAAATAGCCTCATGCTGTACATGTCGTGCAGTATGACTTCATTGGCTGTATTACATTTGTCCAGTAGGACACCTAGTGAACTTTATGGGTACTACGTGCATTTGCAGTCCATCCATGTTGATGTAGGGCCTGTGACTGGTTTACTTCACCAAATGATATGTCCAGAATATAGCGGTTTATAAAACAAATGTATGGTTTTATATGTTTATTTATGTCTAATTTGGgacatttataaaacacacatGAGGGTCTCTGCTTCTCTTCAAGCTCCTATAGGTAATCATGTGAGGGTTAAAGATGAGAACATATCTATAATATTAAATTATTTGTCATGTATTCTACTTGTAAATCATAATATTAGTAGCAGTCATTGTTTTTTACAGTGTACTTTCAGCTGTCTGTAGTCAGCTTGTTTCGGTCTCTAGTAGATATCAATATGATTTATTATTGAGTTAGAATTGaccaaaatataatatttttgcaTTAGTCTTGAACATAGCTTTATAATGGTTGTTTTAGTGGGGGCAGTATGTAAAATGATGTGCTTTGCAAATGCTGTATGTATGTTATAATTATTCCAAAGTTTGCCAAGAATTAAACAGTTTTTATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267919 lncRNA downstream 13869 21306088 ~ 21306323 (-) True G234387
TU267910 lncRNA downstream 27116 21292875 ~ 21293076 (-) True G234378
TU267858 lncRNA downstream 50046 21269851 ~ 21270146 (-) True G234332
TU267832 lncRNA downstream 60992 21258906 ~ 21259200 (-) True G234313
TU267802 lncRNA downstream 82654 21236859 ~ 21237538 (-) True dcst1
TU267928 lncRNA upstream 4024 21335536 ~ 21335999 (-) True G234396
TU267929 lncRNA upstream 4810 21336322 ~ 21336583 (-) True G234397
TU267930 lncRNA upstream 5190 21336702 ~ 21337160 (-) True G234398
TU267931 lncRNA upstream 5784 21337296 ~ 21337816 (-) True G234399
TU267933 lncRNA upstream 7230 21338742 ~ 21338947 (-) True G234401
XM_021593198.2 mRNA downstream 185 21308844 ~ 21320007 (-) True LOC110513266
XM_036964648.1 mRNA downstream 80402 21230669 ~ 21239790 (-) False dcst1
XM_021593155.2 mRNA downstream 90126 21198765 ~ 21230066 (-) False LOC110513176
LOC110513307 mRNA upstream 44312 21375824 ~ 21388805 (-) False LOC110513307
XR_005041504.1 mRNA upstream 84699 21416211 ~ 21420271 (-) False LOC118946634
XR_005041510.1 mRNA upstream 84699 21416211 ~ 21420278 (-) False LOC118946634
XR_005041498.1 mRNA upstream 85272 21416784 ~ 21420272 (-) True LOC118946634
XM_021593238.2 mRNA upstream 107034 21438546 ~ 21455611 (-) False LOC110513321
TU267728 other downstream 139510 21178597 ~ 21180682 (-) False G234224
TU267729 other downstream 140095 21178597 ~ 21180097 (-) True G234224
TU267325 other downstream 668496 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 768195 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1563574 19756204 ~ 19756618 (-) True G233052
TU268086 other upstream 113976 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 138149 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 166896 21498408 ~ 21498832 (-) True G234621
TU268723 other upstream 407333 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 412939 21744451 ~ 21755501 (-) True LOC118946878

Expression Profile