RNA id: LOC110513307


Basic Information

Item Value
RNA id LOC110513307
length 2195
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC110513307
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21375824 ~ 21388805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCCCAAGTCGCCGGAGTTCTGTAAGATGTAAACAACGTAGTGTTTGGTAAACTATAACGTCGCCCGCGGATTTGTAAACCAGCTAGCTTGAtcatgtttttatattttattttatacttGAAGATTAGTAGCTAGCTATGGCTCAGAAGGTGGGAGGTCATGAATaagttgatatggttagttagtaAGCACGTTGTCTGGGTGAACGATATTTTGTCATGATAAATCTGACAGCTCTAGCTAACGTCGTTATCTAGCTAGTGTAACGTTAGGCGCTAGTCGTTTTCTAGCAAGTTCTTACTAGCTACAGCTGTCATGTAGCTACTGTGCAAGCAAGTTAATATCACTGACGTCACTAGAAGATGGAACAAGTCTTTGTAAGCCGCACACAACTAGATAGGTAACTTGCTGGTAgctgttaaaggggcaatctgcgattcaaacaacaacaaagcggAGTCCCCGCCATCCAGAGATGTTTAATTGTCACATGtgcagggttgcaggtgtgattgcaggCTACAGTGAAAATCTTAGGCTCTGAGCTCCAACATACAGgaaagtgaaataaaacaataacattgaaattaaaaaacaaaaatattaatAGAAATATATAGCTGACTAGTGCTGAAATAGCAGGTAGCTGACTAGtagtggctattcagcagcctgaggGTAGAAACTATTGGCCAGTCATCCAGTTCTTgccatgatgctcctgtactgcccGAGTCTGAGTGATTGAAGCAAGGAGAACATGGCGTGGCTACGGGGTCCCTGATGATCTTGGCCTTCCTGCAACATCTGGCGTTGATTTGATTTACCTGTGAACCCCCCCACTGTGTGCTCACTCCATGGCTGGTCTGGGCCACGGCCAAGGTCGCGGCAAGGGGTACATGAGCTTCAGTATCGAGGCAGTTGGGATTGGGAAAGGGGAGAACCTGCCCCCTTCAATTCTCCAGCCTACACCTCTGTTCCCTCCCGTGGAACACAAGCCTGTCCCTTTGGTGATGGGAGAGGAAGCAGAGTACATGTTGGCACTGAAGCAGAGTAGATGTTGGCACTGAAGCAGGAGTTCAGGGGAAACATGAAGAACCTACCATTTTATGTCCGTCCAGCTGTCTCCAAGACAGATGTGGAGCGGTATTCTGATAAATATCAGAACAGTGAGCCGTCTGACAACACCATTGAGTGGAATCCAGACAGGAAAAGGCTACCAAAATAGCTTTGAATTCGTGTCAAGAAGGCCCTAAAAGAGAGACTTACAACTGTGGACCCCAAACCCAGAAAAAAGACCCGGGTGGACAAAGAGGAGATCATCCATAAACTAGAGACATTAGAGGAGGAAGTGACCTCAGAtgaagaggaaggggagaagaAGAAGCAGGAGGAAGGGCAGCAAGATGGGGAGGAGGAATATGATGAAGAAGAGTTTGAAGAGGAGACCGACTATATCATGTCGTACTTTGACAATGGAGAGGAGTTTGGAGGGGACAGTGATGACAACATGGATGAGGCCGTTTACTGATACTTTGAAAAACAACAACGACAGAGAATTGAGCATGCCCAGGACCCAAGAGTCCTGGGAAAATATATGTGACACTCCAGAACTGAGAGACACTCCAAAGCTGAGAGAATGTGCTGTTGTTCTTAGGTCCATCTTGTATACATGGCCTGAAATGATCTGAACTCGACACATGAATCTTCAAAATAACCCAGGATTCAGTCAGTTCCTGGCTTAAAAAATAATTTCAGCAGAAGAAGCAGGTTGCACAGTTCAAACCTGCAATAGTTTTAAATGGCTCTTaagtgtggtggtgttgtggagAGAGAAGTACGTCATTCTTCATAAGCAGACATCTTTTCTCCGTTTCACCAATTATTGTATAATTTCTTAGGTTTTTATCCAATTATAGAAATGTTAAAGAACTTTGAAGATATAAAAGGAAGGTGTTTAACACCAATTTTAATGTTATGTTGTTTTATGTAGTTTATATGTAGTTTTAAAAAGTTGTGCTTTGTAAAACTTTTATATCCATGTAAAATCCCAATGTTGTTTGTTATGAAAGTGGATTTTACTTCACTTGAAATTCTGAAAGAATAAATGGCAGCTAATTTGTAAACCAGGCAGTATTATTTTCTATGCTGCACAAACTGTTTTCCAACTAGAAGCTGTACTGGTTCACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268102 lncRNA downstream 1066 21374036 ~ 21374758 (-) True G234550
TU268092 lncRNA downstream 11691 21363846 ~ 21364133 (-) True G234540
TU267937 lncRNA downstream 25711 21349864 ~ 21350113 (-) True G234405
TU267933 lncRNA downstream 36877 21338742 ~ 21338947 (-) True G234401
TU267931 lncRNA downstream 38008 21337296 ~ 21337816 (-) True G234399
TU268140 lncRNA upstream 39304 21428109 ~ 21428374 (-) True G234581
TU268143 lncRNA upstream 42163 21430968 ~ 21431181 (-) True G234584
TU268145 lncRNA upstream 44183 21432988 ~ 21433289 (-) True G234586
TU268160 lncRNA upstream 82561 21471366 ~ 21472544 (-) True G234601
TU268178 lncRNA upstream 95579 21484384 ~ 21484597 (-) True G234610
XM_036971851.1 mRNA downstream 44312 21320192 ~ 21331512 (-) False LOC110503878
XM_036971855.1 mRNA downstream 44312 21320192 ~ 21331512 (-) False LOC110503878
XM_036971862.1 mRNA downstream 44313 21320192 ~ 21331511 (-) False LOC110503878
XM_036971863.1 mRNA downstream 44314 21320192 ~ 21331510 (-) False LOC110503878
XM_021593198.2 mRNA downstream 55817 21308844 ~ 21320007 (-) True LOC110513266
XR_005041504.1 mRNA upstream 27406 21416211 ~ 21420271 (-) False LOC118946634
XR_005041510.1 mRNA upstream 27406 21416211 ~ 21420278 (-) False LOC118946634
XR_005041498.1 mRNA upstream 27979 21416784 ~ 21420272 (-) True LOC118946634
XM_021593238.2 mRNA upstream 49741 21438546 ~ 21455611 (-) False LOC110513321
XM_021593241.2 mRNA upstream 49741 21438546 ~ 21455611 (-) False LOC110513321
TU267728 other downstream 195142 21178597 ~ 21180682 (-) False G234224
TU267729 other downstream 195727 21178597 ~ 21180097 (-) True G234224
TU267325 other downstream 724128 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 823827 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1619206 19756204 ~ 19756618 (-) True G233052
TU268086 other upstream 56683 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 80856 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 109603 21498408 ~ 21498832 (-) True G234621
TU268723 other upstream 350040 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 355646 21744451 ~ 21755501 (-) True LOC118946878

Expression Profile