RNA id: XM_021593215.2


Basic Information

Item Value
RNA id XM_021593215.2
length 3651
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110513285
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21390417 ~ 21407197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctccctctctcgtgtTTCTTTACCTGTCTGTCAAGCGCAGGGATCATCATAGCGCATCGTTTGGGCGCAACATATCCACAGCGTTCCTATTCACTCCCACCACGCGACCCACTCCCCACCCCTGCTGCGACGCTCCGCGTCTTCTAAACTAGTGGTCGCGGGAGAGATacaggggaagagggggagggggagagaggctcGACGTTAACACAATATCTGGGGGATATTACAGAGACTAAAGTCTGGCTTTTATATCAGAAAAAACATATGCTAAATGGATCTGAATTAAACGCGTTTCATCCATGGTTCACCAGCTCCCTCTTCAGGATGGCCAGTCAGCGCGAAGCTAAGTAGTCGGTGTAGCAGGCTTGACTGGAGGAAGAGGTGCCAGAGGCACTATGGGAGATGGAGGAGCCCTCCATACGGAGGGGAACGCCCTTCTCAAAGCCGTCTTCCAGGGCAAGCTGCGACTGACCCGGCTCCTCCTGGAAGGGGGAGCCTACATCAACGAAGGCAACGAGCGGGGTGAGACCCCCATCTCTGCTGCCTGCTTGGCTGGCTACGAGGACCCCCAGAGCCGCCAGAGGATGGTGCGCTACCTCCTGGAGAAAGGAGCCGATCCCAACATCCCAGACAAGTCTGGGCGGACCGCCCTGATGCATGCCTGTGTCGAGCAGGCGGGCAAAGAGGTGGTGTCCCTGCTCCTAGAGAATGGAGCTGACCCCAGCCTCAAGGACTACACAGGCTCCTCCGCCCTGGTCCATGCCATCAACAGAGGTGACCGAGACACCCTCCAGGTCCTGCTGGACGCCTGTAAGGCAAAGGGCAAGGAGGTGATCATCATCACCACCGACACGTCACCCTCGGGCACCAAGAAGACCAAGCAGTACCTCAACTCCCCCCCATCACCAGGGGTGGTGGACACGCTCTCGCCCATGGCCTGCATGTCGCCCTCAGAGGTGGCAATCCAGACCTCCAATTCCCCAGCAGCAGAGAAGGCTGAGGAGGAGGACAGTATCTTCAGCTTTGCGTTGACATCAGCTTTACCCCTACCCTCCAATAGAACCCTAGGGGAGAAAAGGCCGCCCCCCCGCAAACTCCTGAAGAGGCTCAACTCGGAGCCTTGGGGGCTGGTAGCACCCTCAGTGCTCAGCAGGGTCCCACAGGAGGAGGTTGATGGTGGACTGGAGGAGGAAGGTGGGGGTAGGATCATCACTGAGATGAATGGTCTGTCAATCTCGGGTCCTGGCAGGCCTCTCCTGTCTCGTCGGCACAGCATCGAAACACACGACCCCTGCTCACCCAAACTCATTGACCGATCCTGCTCAGAGGACTGTGCAGCGCTTTGTAGCTCCTCCTGGGCCGACAAGGTCCAACAGCACCAGATCCTGTACCGCAGGAACACCGCGCCTGAGTCTCAGGAAAATACAGGCGGACCAGGGGCGGTGGCTTTACGCGCCCTGGCTCACCCCAAACTTACCCGTATGGAGCACTATGAGTCAGACACACACCTGTGTCCTGAGTCCATCCCTGGATCTCCAGACTCAGGGCGCGTGTCGGTGGAGCGGAGGAAGTACAACGCctcgcccctctctctgctcACCACCTCCTCCCGGGAGTCCCTTGAGAGCATCCCCAattctgtctctcccatcaccatGCGCAGACGGCCCCCCGGCCTCCTAGAGCGCAGAGGCTCAGGCACCCTCCTCTTGGACCACATCTCCCACACCCGCCCCGGGTTCTTGCCCCCACTCAATGTCAACCCCCACCGGCCCATCCCAGACATCCGGGCCAATGGCAAGCCCACTTCCCCCATCCACTCTGGTCCCAAGATCCTGGTTCCAGTTGCCCCTGCCTCACCCAAGAGAGGCCCAGACTTCAAGATGAAGAAGAAACTGATGAGGAGGCACTCCATGCAGACGGAACAGATGAAGCAGCTCTCCACTTTCCAGGAGATCCTGACAGAGAAGGTCATTGAGTCCAACGGGGACTGAGACTTAAAAGGACATGTGAGGGCAAGTTGGGGGGTACAATGGTGGATCTATCTAGTTAGTCCACCATTTTCCTCAACCAGTGCTTAAACCAGGACTACTAACATGAATTTGGCTCATTCAGAGTGAGGCCTCAGTCCCATCTTTGTTCTGTGTCAAGTGCAgatagttatttttatttttaggtGACCTATTTTATTTAGTTGTGTTTCCTTTCTGTGCTGTCACAGAAAGCTGGTTGATTGAGTAATACGGTTTACAGAAGATGTTCTTCTCATTTCTCCTCAAATTATTTATTAATATACCCATTTACAGTCAACAGAAATAGAAACATATTTCTGTGTTTTTAGATGTTTACACACTGCAAAATGTGTACCAATGTCTTGCCTAGTGTTCCGTGTGCTGAAGACATTTTCATCCCCTCTGAAATCAGTCACCTTATCTATCTATGACACTTTAGGTCGAAAGAACAGATCATCAATAGAGATGCTAGCAACAGCTTACCTTGAATTGTTATTCTGAATGTGCTGTCTTCCCGATTTTCAATTATTGCATTAGCTGTTTTAAAACATCAAACTTCAACCCTAAAATACTCTTATGTTGATGGGTATGTTTTGGGGAGAATGATGCTGCATTCCATGAAATAGTTTTCAAGACATATTGCCTGAAGATTTCACTGTCATTGTATTGTTGCTGTTATCTACTTTCACTGTATTTATTTGCCTTCACCTTTTCATCCCCTGATATTTTGTGTTTTAGAGAGCAATTTTGGCTATATGGTCGAACCACACGCCTGACTTACCCTGACGACTACAGTGGGATCAACATGTGGGACCCTTTATGAGTATCACACtgtaataatgttttttttttaagtcaattGAATGGCAATTTCATACAAAATTCCAAAGAAATCCCATGAATGCATGTTTGTTTACATTGGAGTGTGTGAATACTGTAAGATGGCTTTTAGAATAATTAACCTCAAATAATTGCACATTGGTGATATGCGTTTCCATATGGAAAGAGCTCCTAGCACATATTAACTGTAAATAATGTAAAGATAAGACAAACCTAATTTGGTTATGAAATATGTCCATGTGCAATATGCTGTACTGTAATGTCAATGGATTTCCTTCATCTATGGTGGATGTGAAGTTGTCTTTACAAATTTACATTGAAAGCAATCTGAAGCCCTTCTTAACATTTACTGTACACAGTTTTGCCAAAAGGGAGAGTGTGAGGCTCACAGAACTAACATTTACAGTTACTTACACATTTAGATTGTCACTTTTAAATAATTCAATTTGTATAGGGTGAGATTTAAGAGAAAAAAGTTTGAAAATGTTTCCCAAGCTTACAATGTGACTGCTTGTCCCGCTTCCATTGGAAATATTTGTCTTTAATGAAATAATGTTTATATGCTACAAGGTTTAGTATTGACCTCCTGTTGATTGAACTGTATGTTGGTTACTTGAAGTTTAAGAGAAATACAAACAAAAAATGCATATTTTTGTATGCCTGTTAGGAAATAGAAAAGTAAATTCTAATATGTAATCTATTTTCACGTTTGAACTTGATTGTAATTTGATTGTGGAATAAATATTTGTTAAATGTTCATAAGTTAATTAAAACAACCTTTAGTTGTCATGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267971 lncRNA upstream 2128 21387993 ~ 21388289 (+) True G234439
TU267954 lncRNA upstream 26680 21363393 ~ 21363737 (+) True G234422
TU267952 lncRNA upstream 27823 21362305 ~ 21362594 (+) True G234420
TU267932 lncRNA upstream 51892 21338320 ~ 21338525 (+) True G234400
TU267901 lncRNA upstream 53292 21336679 ~ 21337125 (+) True G234369
TU267998 lncRNA downstream 19861 21427058 ~ 21427330 (+) True G234463
TU268003 lncRNA downstream 28096 21435293 ~ 21440035 (+) True G234468
TU268015 lncRNA downstream 50639 21457836 ~ 21459196 (+) True G234480
TU268027 lncRNA downstream 62666 21469863 ~ 21470188 (+) True G234491
TU268030 lncRNA downstream 74096 21481293 ~ 21483472 (+) True LOC110513388
XM_021593203.2 mRNA upstream 29593 21357445 ~ 21360824 (+) True LOC110513274
XM_021593188.2 mRNA upstream 104676 21283497 ~ 21285741 (+) True zgc:171704
XM_021593181.2 mRNA upstream 108584 21270516 ~ 21281833 (+) False trim33l
XM_036971837.1 mRNA upstream 108584 21270516 ~ 21281833 (+) True trim33l
XM_021593169.2 mRNA upstream 120613 21265449 ~ 21269804 (+) True LOC110513224
XM_021593253.2 mRNA downstream 65747 21472944 ~ 21479983 (+) False LOC110513388
XM_021593244.2 mRNA downstream 65747 21472944 ~ 21483516 (+) False LOC110513388
XM_036964154.1 mRNA downstream 85962 21493159 ~ 21497274 (+) True LOC110513414
XM_021593290.2 mRNA downstream 212528 21619725 ~ 21624474 (+) False LOC110513472
XM_021593293.2 mRNA downstream 212528 21619725 ~ 21624474 (+) False LOC110513472
TU267870 other upstream 103415 21286726 ~ 21287002 (+) True G234340
TU267841 other upstream 125911 21264075 ~ 21264506 (+) True G234322
TU266973 other upstream 781692 20608293 ~ 20608725 (+) True G233545
TU266948 other upstream 824705 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 1545765 19827130 ~ 19844652 (+) True LOC110512505
TU268500 other downstream 610397 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 651345 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 651482 22058679 ~ 22068080 (+) False LOC110503910
TU269077 other downstream 897296 22304493 ~ 22304906 (+) True G235426
TU269168 other downstream 1053343 22460540 ~ 22472917 (+) False LOC110514034

Expression Profile