RNA id: XR_005041504.1


Basic Information

Item Value
RNA id XR_005041504.1
length 1184
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC118946634
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21416211 ~ 21420278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTCCAATCTGTTGTGGACATCCATTGAAATGCAGTACATCTGGCGCAATGTAACAGAGTGCTTATGGGTAATGAAAACTTGAGGGGCTTTAGGGTTGTCAGACAATTTTTGGGCCAAACCTAGCTCAAATTCTACACGTTGGAGTAAAACGAGGCTACAGCGTCCATAAGGTAACCATTAAGCCTCGTTCACATTACCCATAAGCACTCCATTACGCTGTGCTGGATGTCATGCATTTCAATGGGGACGTCCACAACGGAGTGGAATTACATCGCCCCACTTGCGGTTGAAGGCACCGTTGCGACATAATTTGACATTTTCCAAACTTTGCCTTGTCTTCagtccagccagagtccggaAGTTACCAAACCACAGAACAAGATGAAAATGTGTGGTTTTCATTGATGGATGATGGCTGCAATCCACTCCCAGTTAAGCGGGGTCCGGTCAGGCCACCTTCAGCTCCAAAATGCCCTGGGGGATGTGATGGACATCCAGAACTTTCTTTCTGGTAGAAGTCAGCAATGACTGGAGGCAAAACATTAACACCATTGAGAACCTGAAGTATGTAAAATATGCTGGGACGCAACATCAGCGgtggctcctcagaggaggaaaACAATACTGCTTGGTGACCTACAGATTATATTTGGAGATGGTTATCGGTGTGGAGAAGCTAGGCACAGAACACTGAATTCCCTGAAAACATTTCCGGCGCCTacttcagtccaagtcaagcactggtctAACTGAATGTGGATGTTGTGTTGGCTGAATGTTCCAGGCACACTCCAGAATGTTCTTCTGCTGGTGAACCTTGTCTTGTGTTGTGCAATGGCAGCTGGTCTGGCAGAAGTTCATGAGCTCCATGACCATAGACTCATAGATTTCGGCTCTGGCCAGCCCCATGCAGTCTTTTCCTCTTCCGAGTCATGATGTTGAGCTTGAGTTTTTTCCCGGATTAAAGATTTCATCCAATGGGTCTACAGGATCTGTACTTCTAAAGCAGCAGCACCAGGATTAGTCTGTAGGACATACACTAGTCAGTGATTAGGCAACATtttactactttgtccccatGAATACACACTCTGACAAGGTACTACATCCACTCTTCACCCTTGTGTTAAAGATCATGCATACTAACCTTCACACACAATACCTACTCCCAacaaaaatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268103 lncRNA downstream 27445 21375827 ~ 21388766 (-) True LOC110513307
TU268102 lncRNA downstream 41453 21374036 ~ 21374758 (-) True G234550
TU268092 lncRNA downstream 52078 21363846 ~ 21364133 (-) True G234540
TU267937 lncRNA downstream 66098 21349864 ~ 21350113 (-) True G234405
TU267933 lncRNA downstream 77264 21338742 ~ 21338947 (-) True G234401
TU268140 lncRNA upstream 7838 21428109 ~ 21428374 (-) True G234581
TU268143 lncRNA upstream 10697 21430968 ~ 21431181 (-) True G234584
TU268145 lncRNA upstream 12717 21432988 ~ 21433289 (-) True G234586
TU268160 lncRNA upstream 51095 21471366 ~ 21472544 (-) True G234601
TU268178 lncRNA upstream 64113 21484384 ~ 21484597 (-) True G234610
LOC110513307 mRNA downstream 27406 21375824 ~ 21388805 (-) False LOC110513307
XM_036971851.1 mRNA downstream 84699 21320192 ~ 21331512 (-) False LOC110503878
XM_036971855.1 mRNA downstream 84699 21320192 ~ 21331512 (-) False LOC110503878
XM_036971862.1 mRNA downstream 84700 21320192 ~ 21331511 (-) False LOC110503878
XM_036971863.1 mRNA downstream 84701 21320192 ~ 21331510 (-) False LOC110503878
XM_021593238.2 mRNA upstream 18275 21438546 ~ 21455611 (-) False LOC110513321
XM_021593241.2 mRNA upstream 18275 21438546 ~ 21455611 (-) False LOC110513321
XM_021593242.2 mRNA upstream 18275 21438546 ~ 21455611 (-) False LOC110513321
XM_021593226.2 mRNA upstream 18275 21438546 ~ 21455612 (-) False LOC110513321
XM_021593230.2 mRNA upstream 18275 21438546 ~ 21455612 (-) False LOC110513321
TU267728 other downstream 235529 21178597 ~ 21180682 (-) False G234224
TU267729 other downstream 236114 21178597 ~ 21180097 (-) True G234224
TU267325 other downstream 764515 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 864214 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1659593 19756204 ~ 19756618 (-) True G233052
TU268086 other upstream 25217 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 49390 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 78137 21498408 ~ 21498832 (-) True G234621
TU268723 other upstream 318574 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 324180 21744451 ~ 21755501 (-) True LOC118946878

Expression Profile