RNA id: XM_021593242.2


Basic Information

Item Value
RNA id XM_021593242.2
length 3498
RNA type mRNA
GC content 0.53
exon number 11
gene id LOC110513321
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21438546 ~ 21455972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACCGAGGATTTTTCCGCGGCCTATCTGAAGTGAAGTTTAACTAAAAATCCCCGGATCATGGTTCTAGATGTGATAAGGCTCCAGACTTCAGTCCAACTGAAGTATTGGGACAATTCCATAATGGAGCGACTGAATGAGGAGGCGGTGCGGCTGAGCCTGCTGAAGCGAGGCCTGGACTCCTCCTCGCCTGCAGGCGGCGCCACAAGCAGTGAGCGAGACGAGCTGCTCTCCAAACGCATCAAGATGGAGGGCCACCAAGCCATGGAGCGCCTCAAGATGCTGGCCTATCTGAAACGCAAGGACCTGGCCAGCCTGGAGGGGGGAGTGTTGGGAGGGGTCTCAGGAGGCGGGGCCCTAGGGGGTGAGGTCAAGGGTCATGGGTCTTCAGGGGGAGGGGCTTATGAGGAGAAGACCAATGGGAGCCTCCGTGGTCAGGTTGTGGGAGCCCATGGCATGGTGGGAAAGAGCGGGAAGGAGAACATGGGCGAGGAGCCGGTGGATTTCAGCGCCCGGAGAGgTGACGTTGACCGGGAGCGACACACACCCTCCCCTGATGTGATCGTCCTGTCAGACAATGAGGCGTCCAGTCCAAGAGGGCCCAGCCAAGGGGAAGAACGCCTGAGGGTAGCGAACCTGGAGATGTTTAAGGGtaagacaggggaggagaggcagaagaTGATCAGGGCTCTGAGAGAGGAGCTGAGGCTGGAGGAGGCCCGGCTGGTGCTGCTGAAGAAGCTGAGGCAGAGCCAGATGCAGAAGGAGAACCTGGTGCAGaagGTCCCTGTGGTCCAGAACACAGCGTCTGCCCTCCAGAGCGGTGCCGTCCACGGGGCTCAGAGCATGAGCAAGATGTCTGGCCGCCCTGGCCACCACACCCCAGAGCCCCAGAACCATCGCACTGCACAGGGTCACTCAGTGATCAGGTCAGCCACCAACAGCTCCATGTCTCAGATGATGATGTCACAGAGCAGGGTGATAGCGCCCAATCCTGCCCAGCTGCAGGGCCAGAGGCTGGCACAGCAGAAGCAGGGTGGCATGCGCTCCTCGACTGGCAGCTCTAACAACGCCGTTAGCTACCAGCAGCAGGTGGCAGCTTCTCAGCGCtctggctcctcctcctcctctgccatCTACATGAGCTTGACCCACATGCAGGCGGCAGGAGCCGCAGGAGGGGTCAGCGGGGTGGGGGCGGTCAGCCCCTCAGCCACACACAGCCCAGGGGGGACATCGGTGGGCTCCTCCATGGCAGACACAGCCAGTAGCCAGGCGGCCGCCAAGCTGGCCCTGAGGAAGCAGTTGGAGAAAACCCTGCTGGAGATCCCGCCTCCAAAGCCACCGGCACCGCTCCTCCACTTCCTGCCGTCAGCGGCCAACAGCGAGTTTATCTATATGGTGGGCCTGGAGGAGGTTGTGCAGAGTGTCATTGACAGTCAGGGTAAACTGCGTTTGCCCTCCTCCATGGAACCCTTTTCTTGTGCCCAGTGCAAGACGGACTTCACCCCTCACTGGAAGCAGGAGAAGGGTGGGCGCATACTCTGCGAGACCTGTATGTCATCCAATCAGAAGAAGGCACTGAAGGCCGAGCACACCAATAGGCTGAAGAACGCCTTCGTTAAGGCTCTACAGCAGGAACAGGAGATTGAGCAGAGAATCCAGTTGCAAGCCGCTCTTGCCACCAGTTCAGCTCAAACTGTTCCAAGCGTCAGTAAGGCTGAGTCCATGAgcagacatcacacacacagacagGCGCCTCAGCCCCAGGTGACCCAGTCACAGGCCTCCCTCCAACGGGGTCTGTCTGGCTCGGCCCGGGGTGTTCTGTCCAACTTCGCCCAGGCTTCCCAGCTCTCAGTGGCCAGCAGCCTGCTGGGCATGACTGGAAAGCGCAGTGGACAGCTGAGCACTAGTGGGCACAGCCGGgcacagcagcaacaacagcagcagcagcagcagcatcacgaCAACCGCCGCCAGCTCTACAGCATCCCTGggGTGAACATTGCCTACCTGAACCCAGGCAACGTGGTCGGCCACAAGGGGTCGAGCCTGGCTGACCGTCAGAGGGAATACCTGCTGGACATGATCCCGCCTCGCTCCATATCCCAGTCCATCAGCGGACAGAAATGAACCTCACCCCGCCCCGACGCAATACCACAGCCCTTCCCCACACCACACCCCAACCCCCATCGCATGCAGTGCCTGTTAGTGTGCCTACCAAACTAACCTGTATGAAGAACACAATCAACGAGTCAAAAGAGGCCACCAAACTCTGAAATGACTTTTCATTTGAACGTGATGCAAACCCCTTTTAATTCCTCTTGTTATTAATATCGTCATTAGTGCTATGGATGTTGTTACTACATTGCCGCTACCAGTTATGAGCGTGCCCATCTTTGTGGAGAACCCCTGTCTTTATATGCTTGTGGCAGTGTCCCGAGTGTGGGGTGTCTTTTGTTTTCGATTTATGCGCTTGTTTTTGAAGCAATATTTTGTCTCGCTTGAGCTTTCCTTACCGGACTCAAGTCTTTGTTATGTCGGGAATTACCAAGCTATCTTTTTGAGAACTGCACCACTCTCCAATCCCTGCTCTTAGTCTGATTTCTGATTTCAACCATCACTctgtttttccacatttggttgtgaATTGTTGGAGGAGGAATTCTACCAGCCCGGCCAAACCTTTGTTTTAAAAAGGTGATTGTGATGGTTTAACTTTGACCTCAATCTGTCAAGCCTTTGAGCTTGAGCTTTCTTCAAAGATTTGTGGGGAGAAAAGAGGATGTTTGAGACCCTGGAGTTGTCTGAAGCAATGCTCCTCTAACTGATTGTTGAAACAAGGATGGATACATATCCCACAAAGAGAGAGAGCCCAATGCAACATCTGGACTTGGATTGGTTGCACTGCTGAAAAAATACTACTCCCATTGTACATGAAGGCATAGAAACTGAACCTATAGCAGAGTTGCCCTGTATCCTTTCACCTTTTCattttttgagggggggggggggggggggggctgtagttCAGAAGTTAGGGGAtgatccctctctcccctgttttcaTCTCCTAGCTAATAGGATTTGCTATTGTTCACTCTACCCTGTCATTCAAAGTTCTGGATTCTGTTGAGATACTATTTGAACTTTCTTATGTCAACATTATCCCCATGGTGTCTGGGAGGCATTTGAAAACGGTCAGGGAGAGTGGCTAGCTATTAGCTTTAAGCCTGCTCTAAGCTATTTAGATGTTTGGTGTCTTCTAAAGTGTTAGTGTATCTGAAAGGTACTTTGCACAGgagacaataaataaatacagaatgaCAAATGCAACTTGAATATTTACATAAATCAAACAGTTATAGGagacatatacaggatatacagtaacagtcaaaagtttgagcacacctactcattcaagggtttttcattgttttactattttctacattgtagaaaatagtttaagacatcaatactataaaataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268145 lncRNA downstream 5257 21432988 ~ 21433289 (-) True G234586
TU268143 lncRNA downstream 7365 21430968 ~ 21431181 (-) True G234584
TU268140 lncRNA downstream 10172 21428109 ~ 21428374 (-) True G234581
TU268103 lncRNA downstream 49780 21375827 ~ 21388766 (-) True LOC110513307
TU268102 lncRNA downstream 63788 21374036 ~ 21374758 (-) True G234550
TU268160 lncRNA upstream 15755 21471366 ~ 21472544 (-) True G234601
TU268178 lncRNA upstream 28773 21484384 ~ 21484597 (-) True G234610
TU268181 lncRNA upstream 32482 21488093 ~ 21488380 (-) True G234613
TU268185 lncRNA upstream 37613 21493224 ~ 21493785 (-) True G234617
TU268187 lncRNA upstream 41219 21496830 ~ 21497139 (-) True G234619
XR_005041510.1 mRNA downstream 18268 21416211 ~ 21420278 (-) False LOC118946634
XR_005041498.1 mRNA downstream 18274 21416784 ~ 21420272 (-) True LOC118946634
XR_005041504.1 mRNA downstream 18275 21416211 ~ 21420271 (-) False LOC118946634
LOC110513307 mRNA downstream 49741 21375824 ~ 21388805 (-) False LOC110513307
XM_036971851.1 mRNA downstream 107034 21320192 ~ 21331512 (-) False LOC110503878
LOC110503879 mRNA upstream 2219 21457830 ~ 21469227 (-) True LOC110503879
XM_036971866.1 mRNA upstream 58927 21514538 ~ 21539187 (-) True LOC110503882
XM_021593273.2 mRNA upstream 95807 21551418 ~ 21587320 (-) False LOC110513430
XM_021593278.2 mRNA upstream 95807 21551418 ~ 21587320 (-) True LOC110513430
XM_021593285.2 mRNA upstream 133330 21588941 ~ 21609130 (-) False LOC110513449
TU267728 other downstream 257864 21178597 ~ 21180682 (-) False G234224
TU267729 other downstream 258449 21178597 ~ 21180097 (-) True G234224
TU267325 other downstream 786850 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 886549 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1681928 19756204 ~ 19756618 (-) True G233052
TU268159 other upstream 14050 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 42797 21498408 ~ 21498832 (-) True G234621
TU268723 other upstream 283234 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 288840 21744451 ~ 21755501 (-) True LOC118946878
TU269608 other upstream 1118222 22573833 ~ 22574989 (-) True G235881

Expression Profile