RNA id: LOC110503879


Basic Information

Item Value
RNA id LOC110503879
length 5065
RNA type mRNA
GC content 0.51
exon number 27
gene id LOC110503879
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21457830 ~ 21469227 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAACATGTGTCTGTACTGCAGTTGAGGCAGTAGGAGAGGAGGGAATGAtagtgtatttttttaaattactagAATAGAATGGAAACAGGATCAACCATTTAAGTGAAACACTATCCACATGCGGAAATCATATCGATAACTTGAGACCAGAAAATATAGCTAGCGTTTTGAGAGAATGTGCCAGTAATATGTCGTCTGGGAACAAGTCAAAGAAATGGGAGATTCGGGCACACAAACCGGGTTCAGGGGGCTATGAGCGGTTGACAGCTGAGGAGATGGATGAACAACGCATCCAGAAGGTTGCCTATCAATACCTGTGCCGTTTGGAAGAGGCTAAAAGGTGGATGGAAGCTTGTCTCCATGAGGAGCTGCCTGCCCCGACTGAGCAGGAGGAAGGGCTGAGGAACGGGGTGCTGCTGGCCAAGCTAGGCCACTGTTTCACCCCCAAGATACTCCCCCTCAAAAAGATCTATGACCTGGACCAGGAACGCTTCAAGGGTATGGGATTGCAGTTCCGCCACATGGACAACATCAACCATTGGCGCAGTGCGATGGCGGAGATCGGACTGCCAACTATGTTCCACCCAGAGACGACTGACATCTATGATAAGAAGAACATCCCCAGAACTGTGTACTGTATCTGTGCTCTCAGCCTCTACCTTTTCCGACTATGTTTGGCCCCTCAGATCCATGACCTCTGTGGCAAGGTCAAATCTACAGGGGaaaatataatattaatattccTCTCTCATTCCTGTGTTTTTGGGGTAATATTTATTCTCCAGAGGAGATATGGCATCCAGATGCCAGCCTTTAGCAAGATTAGGGGAATCTTAGCCAATGAGATAAGTGGATGAGGCTGCTAtccatGCTGCAGTTATAGCGATCAACGAGGCGGTGGAGAGGGGGCACGTGGAGGTCATTGCCCAGGCCCTGCGGAACCCCAGCGCCATGCTCACCAACCTGCAGGAGCACCTGATGCCAGTCTACCAGGAGATGGCACGGGCACAGAAGGCAGCTTTCGCCTACACCAAGtgtaactgttcagaggagaaggATATCTATGAGGAACACCTGACCCAAAGTGAGATTCAAGAGAACATTGACAAAGTAAATGTGCGTGCGGCCATAGAGCAGGTGGACGAGGCCCTGGATTGTGGGGACTCTGGCCATCCTGGCAGCCCTCCAGGTCCCCTGTCTGGCCCTGAGGGGCCTCCAGAGAGGCCATGGTACCTGGAGCAACTGGCCACTGACCGTGAACAGAATGCCCTGGACCTGggctgtgtggaccctctggagCGAGATGAGCTGCAGAAGGAGGTGTTGTGGCTAACGAGGAGGCCCAGAGCAACCAGACAATGCAGAAAGCTGTAAGATCTATCAACGAGAACCTGCGTCTTGGGGAGCCCAGGCAGACTGTTCGTGCCCTCATGGACCCTGAGGGCATCTCACTCAACTCCTTTTCTCTGCAACTTTACTGTAGTGAATATGGTCCTCTGTGCCTGCAGGGGGACCTGCAGCAGGAGGAGCTGTACGTAGCAGTGGAGATACTCTCGGCGGTGGCTCTTATCAACTAGGCAGTGGAGGCCAAAGATGTGGGAGCCTTCTGTGCCACGCTGGTCAGCCCTGCAGCCGGTCTGGCCGATATTGACGACAGCTTGGTCCAGAGGTACTTTGAGGAGCTGGGTGATCAGAGGAGGAAGGCTGTGAGAGCTCTGCTGACGTGGAACAATCTCCAGAGAGGACCGAACTCTGTAAACGCAGCAGCACAGGAAGAGCATGACCAGATCCTCGCCATCTGGCTGATTAACCAGGCCCTGTCTCGAGGCGACCTTCAGAAGGCTCTAGCTGCACTGCTGCTGCCTTCTAGTGGCCTTGAGGAGGTGACGACACTCAATGCTCGCCGCTACCATGACGTACTGACCAGAGGCCGGAGGTTGAAGGCTGAGGTGAGCCGTAATCCAGGAGCAGAGTTGTGGTTGGCTGACATTCAGAAAGGAGTGAGAAGAGCCAATCACGACACTCAAAGAGCCCCGAAGATGTCCCTGGGCTTGGTGGCCGTGAACCAGGCAGTGGAGGAGGGCAAGACGTCCCAGACGCTGCGAGTCCTGCGTCTGCCAGAGGTGGCGCTGCGGAGCGTGGTGGAAGAATGTGCTGGAGTGTACCAGGCTGAAATCACCACCCTACTCTTGGGCCAAATCTGTGGGAGGTCAGTACCCACTACCACTCAGCCTCTGTACCTGGCCCAGCTGATCTTCCTGAAGCCCCAGAATAAAACGACTCTCTTCATGGAGACTGTCATCTTCACCCTGTTCAACTACGGCTCCGACTGCAGGGAGGCCTACCTGCTGCTGCAGCTCTTCACCCCCGCGCTGTGCCATGAGATCAAGTCATTGTACACACACTATTCACACACTATACAGGTGGTGACTGGGAACCCCACAGTCATTAAGATGTTTGTGAGTTTCTACCGCCATGCCCGCGGTCAGACCGCGTTGAAGGAGATCCTCGGGCTGGCCATTAGAGAGGTGCTGCAGGACTGCATCCTCAGCATCCGCACGGACCCCTGCGAGATCGACAAGAGCTGGGtcaaccagacccagaccaaCCACAAGAGcTCCCTGCCCTATGAAGTGAGTGCAGAGCAGCGTCGCCTGTACATCTCTATCGTCAACCTCAAGAACGTTACAGACCGCCTGCTCAACGCAATCACCAGCAACCTGCATAAATTACCATATGGGATGCGCTACACAGCCTAGGTCCTGAGAGATTCTCTACATGAGAAGTTTCCTCAGGCCAGCGAGGATGAGCTTTACAAGATTGTGGGGATCCTGGTGTACTACCGCTACAACCCAGCTGCTGTGGCTCCGGATGGTTTTGATGTGGTAGAGTTCTCGTCTGGCTCCTCACTGCTCCCTGAGCAGCGTTGCATCCTGGGTTCCATCGCACGCATCCTGCAGCATGCCGCCTCACACAAACACTTCCACGGTGACAGCCCTCACCTGCGCGCCCTCAACGACTACATTACCCTGACGCACTCCAAGTTCCGTAAGTTCCTTCATGCTGCGTGTGATGTGTCGGCGCCAGAGGAGCATTTTAACATTGAATACTCTGAGATGGTCATCCTCAACAAGCCTGTCATCTATATCTCCATCAGTGAGCTCCTTAACACACACAAGcttctGATGGAGCACCAGGACTCCCTGTGTCCCGACCAGTCTGACCCATTGCTGACTGTTGACCTGGGGAAGGTGCCCACTATCCAAGCTCTGGTTGGTGAGGGGGCTGTGAGCGCTGCGGAGCCCCAGAAAGAGCAGACCCTGGCCCAGTACAGTAAGATGGAGATGTCCCTCAACCTCACCAGCAAGTTTGATGTTTTCAGGGGCTCTGACGACCACCCTGACGCCAGGGGGATTCTCCTCAGTACCAAACAGTTTATCGTCGACTTGATCCGAGCCCAGCCTGGAGAGCTTCTTCCTCTCAGGATCAGgaAGTGCAGCACGCGTGGATGATGCACTGCCGTGCCCAAAGGGACGCCCGCACCCCTGAGAAGATGAAGAGGAACCAGTTGATCGTTTCCGACGGCAACCTGTCTCTGGAGGAGAAGAAGCAGAAGATCCAGCGTAGCCTGAGGAGGCTGGAGAGCCTGGGGGTCCTGACCCCACCTGACTCTGAGACACAGATACTACAGCTCATAGCCAAGGTAGATGGAAACATACactacacagcacacacacaatgacatttTAATTGTAAAGTTATCACACCAAATCAACTACAGATaaacctctcccccccccccccgagacaGACCATTGGCAGCCTGCACTGCAAGACCTCCTTCCACAGCTAACAGGTGGACTTCTACAGCAAGTACATCACCACCTGCCTGGGTAACCTCACCGCCAAACACAGTGAGGTGAGTGGAAAGAAGGCAGCAGAGAGCAAAGGGAAGAAGAGCAAGCATCCCACTCTGACCTACACTGTTACCCGTTTACATGAGAAAGGATTCCTTGTGGAGATCGAGAACCTGCCAGTCACACAGTTTAAGAATGTCATCTTTGACATTGTGCCCGGTGATGAGGGTGGCACGTTCCAGGCTCGCTTTATGGGTGTGGACATGGAGAAGTTCCCCCTCAAATACCAGGACCTGCTGCAGCTCCAGTACGAGGGAGTGGCGGTGATGAAGATGTTCGACAAGGCCAAAGTCAACGTCAACCTGCTAATCTTCCTTCTCAACAATAAGTTCTTCAAGAAGTGAGGGGGTTAGGATAGTGCCAGATCTCCCACCCCAACACGGGGAGCAGCCTACACAGTCCTCTAGTATTTTGTGCACTACTTAAAATGAGCACAGGACCGCCGCTAAGCTACATTTGCCACACGCTCCACATACATATGCTCTTAGGGGATTTTATGTTGTGCAACTTAATGATTCAAATGCCACTTTCAATGCCATAGGAACTGGTACTGTAACATGTACCTTGAGACTTCCTGTGATTATGCTTTATTGTCTCCCTGATGTGTAGGTTACTGACAGGTCTGGCCACATTGTAAGGAATTTGTGTAATTGACTGTAAAGACAGATGATATTGCAATGAGGGTGATTCCATTAGCTAGGCTTATGTCAGATGAGATGTGGTTGAGCCTTGTGGTCCAACCTTTGAACTCTAACCTAAGAGGCTTGACCTTTTTGTTAGTCTGGGCTTAACTTTTGTTCAAACTTACGTACATATTTTCTGTCATTTAATTGTTTATCTTCATATTTTCATCTGTCATTCTGATACCCTTATGTCAGTCTTGATTAGTTTAATATTTTTCTTTTCAACACTAACATGTTCAGGCCAGTCAAAATTTCCACAATCGGCTGCTAAATATGAATGTGGACCAACATGACAATACAACTGTTGTTATTTCTTTACATATCAGTGCTGTAGCTGTAAAGGAAATTGGTTGATTAATCTAACCAGACAACAGACCAACTGCCTGATAAATTGTCCTAATGAAACTGTTAATACTTCTGTTTTTTTACTTTtatatttaaataaaaatgtagttTCTGTCA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268145 lncRNA downstream 24541 21432988 ~ 21433289 (-) True G234586
TU268143 lncRNA downstream 26649 21430968 ~ 21431181 (-) True G234584
TU268140 lncRNA downstream 29456 21428109 ~ 21428374 (-) True G234581
TU268103 lncRNA downstream 69064 21375827 ~ 21388766 (-) True LOC110513307
TU268102 lncRNA downstream 83072 21374036 ~ 21374758 (-) True G234550
TU268160 lncRNA upstream 2139 21471366 ~ 21472544 (-) True G234601
TU268178 lncRNA upstream 15157 21484384 ~ 21484597 (-) True G234610
TU268181 lncRNA upstream 18866 21488093 ~ 21488380 (-) True G234613
TU268185 lncRNA upstream 23997 21493224 ~ 21493785 (-) True G234617
TU268187 lncRNA upstream 27603 21496830 ~ 21497139 (-) True G234619
XM_021593243.2 mRNA downstream 1858 21438546 ~ 21455972 (-) False LOC110513321
XM_021593235.2 mRNA downstream 2217 21438546 ~ 21455613 (-) False LOC110513321
XM_021593226.2 mRNA downstream 2218 21438546 ~ 21455612 (-) False LOC110513321
XM_021593230.2 mRNA downstream 2218 21438546 ~ 21455612 (-) False LOC110513321
XM_021593238.2 mRNA downstream 2219 21438546 ~ 21455611 (-) False LOC110513321
XM_036971866.1 mRNA upstream 45311 21514538 ~ 21539187 (-) True LOC110503882
XM_021593273.2 mRNA upstream 82191 21551418 ~ 21587320 (-) False LOC110513430
XM_021593278.2 mRNA upstream 82191 21551418 ~ 21587320 (-) True LOC110513430
XM_021593285.2 mRNA upstream 119714 21588941 ~ 21609130 (-) False LOC110513449
XR_002471999.2 mRNA upstream 142927 21612154 ~ 21619661 (-) True LOC110513497
TU268086 other downstream 2114 21445488 ~ 21455716 (-) True LOC110513321
TU267728 other downstream 277148 21178597 ~ 21180682 (-) False G234224
TU267729 other downstream 277733 21178597 ~ 21180097 (-) True G234224
TU267325 other downstream 806134 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 905833 20551783 ~ 20551997 (-) True G233513
TU268159 other upstream 434 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 29181 21498408 ~ 21498832 (-) True G234621
TU268723 other upstream 269618 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 275224 21744451 ~ 21755501 (-) True LOC118946878
TU269608 other upstream 1104606 22573833 ~ 22574989 (-) True G235881

Expression Profile