RNA id: XM_036971866.1


Basic Information

Item Value
RNA id XM_036971866.1
length 6649
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110503882
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21514538 ~ 21539187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAACAATACCTTACGCATAACTAATAGCCACAGAACCCAGCGAGGGCCGTTCTACAATAGCAAACAGAACATTCTCAAAGCAGCCTCGTCCAGAAAGAAGCCAGCCGTTCGCTGGACAGTGGAACTGAAACTGCggaaatgtttttttgagatttttgttgctattttttatttaatacattttaaggaGTGAAGCTCGCTATTAAAGCGTCGCTATAACAGTTAGACTTCGAACTAAAAGGGATTCATGCTAAACCATGAACCAAACGAGGAATGTTCAGCTTTTTCTATTGGTGGTCATATCTTCAGtGTTGGGCAGAGCCTCTGAGCTGGCCTTCCTGAAGGAGCCCAATGATGTCATCGCCGTGCGTGACCGGCCCCTGATGCTGGACTGCCAGGTAGAAGGGGAGGGGCCTATCTCTGTGATGTGGCGGCGCAATGGAGTGTCCGTTCCCACCGGGCCGAAGGCTAGCGTGTTGGCCAACGGAACTCTCCTGATCAAGAGCTtccagaagaggagagagagcaacgAGACGGACGCTGGGGAGTATGCCTGTGCTGCCCAGAACCACTATGGCATGTTGATCAGCCGCAAGGCCAGGGTTCAGCTGGCATctcTCCCTAAGTTCCACATACACCCAGAGTCCATGTCGGTGGATGAGGGTGGCGTTGCCAGATTGACCTGCCAGGTGAACGGAATCCCAGAGGCCAGCATCTCCTGGGAGAAAAACAGAACTGCTGTGAATACTGACGataacagGTACACCATCCTGCCCACAGGGATCCTGCAGATAACCGGTGTAAGGCGGGCTGACAGTGGTGTGTATCGCTGCGTAGCCACCAACATCGCTAACACTCGCTACAGCAATGAGGCCCAGCTCACTGTCACTGtggcaGCTCCACGGATCTACAAGGAGCCGGTGATTCTGTCGGGTCCTCAGAACCTGACCATCACTGTGCACCAGACCGCCATCTTGGAGTGCATCGCCACTGGCAACCCTCGACCCATTGTGTCCTGGAGTCGGCTGGacGGGCGCTCCATCGGGGTGGAGGGTATCCAGGTGCTGGGTACGGGGAACCTGATGATCTCAGATGCCAACTTGCAACACTCTGGGGTATACGTGTGCTCTGCTAACCGCCCTGGCACCAGGATGAGGCGTACTGCGTTGGGCAGACTGGTGGTGCAGGCTCCTCCTGAGTTTTTGCAGTGGCCGCAGTCTGTCTCCAGACCAGCAGGGAGCAGTGCAGTGTTCACCTGTATGGCCCAGGGAGTCCCCGAGCCTCACCTCATCTGGCTGAAGAACGGCAAAATCCTGACGCCTGGTGACAACGTCAAGCTCACCAACAATAACAGCACGCTGGCGGTGACGCGCATCACCACGGATGACGAGGCCATCTACCAGTGTATTGCTGAGAACAGCGCTGGCACCAACCAGGCCAGTGCCCGCCTGGCCCTCACCCAGTCCACGGAGTTGCCCGAGGCCCCTCAGGATCTGACGGCCACGGCCCTGTCCCCCACCACTCTACAGCTCACCTGGGCCCAGCCTGCCCCAGAGGTCACCGACGGCATAATCGGATATGTGCTGCACATCCGCATGTTGGGCGAGCCAGACAGCAGAGAGCTGCAGGAGGCTGTCAGTAAGACCACCTTCCAGCATGACTTCACCACCCTGGAGCCTGCCACCACCTACTCCATCTACCTCAAGGCCTACTCCCCTCTGGGAGCCAGCCAGCAGTCCAGCACTGTGGTGGCTACAACACTAGGGGGCGTACCCAGTTCTCCCAGTTTCTTCACCAAGGTGCTGAACAAGACAGCCATGCAGGTGTTCTGGGAGCTGCCCAGTAAGTCGGGCAAGGTACAGGGCTTCAAGCTGTCCTACCGCGAGGTCCCCCAGCCCAACTTCCAGGGGCAAGAAGTATTTCCCGGTCACATCAACACCCACACCATCTCCCATCTAGAACCCACTGCTGTGTATGAGATCCAATTGGTGGCCTACAACGGCAATGGGGACGGCACTGCCAACAAGCGTCTGGTTTCACTGGCTGAGAGTGGTACCAGCGCCAAGACCAGCTCCGGTGGGCAGAGCCCATGTAACTGCAAGCAGGAGGATGAGGGGTCCATGACTGGCATTGTGGTGGGAATCCACACTGGCATGGCATGTATCATTTTCTGTGTGCTGTTCCTCATGTTTGGCTACCGCCGCAGCTTCTTCTGCAGGAAGGGGACCCAAGATGGCTGGTCAGGGCCCCGAGGAGGAGACAGGAACCAGCGGGCTGGCCCACCAAAAGAGGGGGTGATCCGCATGCCCGAGGTCATTGAATTAGTGCCTCAAAGATGTGACTCTATCACTGCTCCAGTGATGGTTGTTAAGGGTCAAGCCCCCCCAGCGCAGTGCCAAGTCCTCATCGAGCAGCCCCCACCATGCCAGCCTGGCACAGGCACCGGCTAAAGCACCCAAACACCATTCCACTTACCTCCCCCAACCCCAGTCCCCTTACCCTGAGAAATGAATGGCTGTTCTATGGTTCCTCCACCTCACCTGCCCACCAACGCCTTAGCCATAGTCTGCCTATTGCAGCATCCAGCCGTAGTTCTagcagtgaatgagagagagagattgagaatgaAACTGAGAGTAAGAGGTGATGTGTTGAGAACTTCTGTTGAATGTACAATACCACAaaggaaaacatttattttataataGCTTCAAGTAAAAGTAGTACCAATGTAGTCATGAGTAACTATTGGGATGTTAGCCCCATTTCTGTCTTGTGTCTTTTACACCAAAGCTGAAAGCCTTATTTTAACATTTTATGTTTAGTTCCATGGATTTGATAGCCATGGAGGAAATGGGCACAGGCCATTTATTATTCAAAATGACTCATTAGGTAAAATGCTGCTGGCTCATCTCTGAAGATAACTGCAATATTACTGTATTCCTTATATTTTCAGTGTGGTATTGGACATTGTGCATCTTCTTAAAACCAAAACTCATAAATAGCTTCATTTTATGTCATTTTAAGTTAATGGCCAATGGTGCCATTTTCAGGTTCTGATAGATATACTGAGGCCTTTTACCAGTTTGAACAGTGAACGTGGCTCTCAGATGATTAGATGTTGAGCTTGAGTCAATGGATGAGATAGAAAGTCTATCAGTCTTACATTGGGGCCAGTACCAAAGTGATTTCTCTGTTCAGCTTgtgatacagtagatatagtgaaTGTTTTCAGTCGCTTGGTGTTCTCTGGTTAGCGCCACAAGATTGCACCTCGGGGCTACGTAACGTGGTCGGCTTTAGCCTTGCCGAACCTGACTGAGTTGATTGTTTGACTGAGTTGATTGTTTGACTGAGTTGATTGTTTGACTGAGTTGATTGTCTCACCGTGTTAGCCTTGAGGCGGTCCGGGGTCGAGGGATCACAGATTCAGCCATTTCTGTTCAACCCCCTATCCCAAACTCTTTGTTAACTTTCTGCTCCCCCACCAAAACGTTTTACCTCCAAAGATAGCTACCTCAGCCTGACGAGAACGTCAGAGCTATCAAGGTAACCATTTTGCCTGTTGTGCTGCTGGTCAAGCATACCTACCTCAACCAAAAGGGTACTTCTGTGCccccttttccttttctttttGGGTGCCAAATGCCAGTCCTGTGCCAGCTGCCACTCCTTGTGTTCAGAGGGTGGTACACTCTTTCGATTCCTCCCTGTCAAGAAAAGGAGGAGGCCTTGGATCGTGATTGAATGTCACTAGGCCCATCTTCTACCCAGAATGTAACTGGTTCGATCTGTGGGTTTGCCAGTTCACTTATGTTGTTTGACATTGTATAATTCCTGATCGCCGATTTTCTGCTTTAATCGCCTGCCTGCTTCTAATCCTGCTATTGGGACTCAACACCTTGTCCAACCCCTGAACGTCTGCCTTAATTTAAAGCGGTTCATTCAGAGTTGGGTCACTTCAGCTACTGATATGCAGTATGGAAGCACATGGATATGATTCAAGTACATATTCTACCTCAGACTCAGCAGCTTCACAAACGGGTGATGGAGAGACAACCATCATTGATGATGTCACAACAAGCGGTCTTGGAGCCCAGCTGTGGAGCACTACAAGAACAACAAACATGTCTCCTCAGTTAAACAGGGAAAGCGAGATGAATGTCTCTTTATTAAGGCACCACCTGCTGCTGCCATCACCATCTCGTCTCACTGGAGGAAGACATGACTCAGAAACGTGCAACAGGAAACAAAGTTGGAAGCCTGACAGAAAGTGAGCGATAAATATGAACGCACAGCATTTTTTAAACTTTGAACATTGCATGAAAGTATGGACATTAAGGAATATAAAGCCCAAGTTTCACCATTCTGTTATGGATGAATTTGCTGACTATTTTGCCCTTTCCTGCAGAATTCCAAAATGTAATTAGTTAGAAATGTATATTTTTGCCATTTTCAGGAAGCTTTCTGTCACCTACCAAAGGTGATTGGTTTGCAGTGCCTCAAATACCTTTGTTGTCATGGGAAAATTCTGTTCAGCAGACCATGGTTAACTTTCTCGAGTGACTAATTTGTCTTGTATTTTGTCTTCATGTCTATTCATATTCAATTCTTACCTCACACTTACTGCACGAATGACACTAGCTTTTACCGTAGACCGCTGTTTCAACAAATATTTCCAAATATTCTATGAAAACCAAGTCGAACGATATCCAAAGATGAATGATTGTTACGGTTTTCAGTCTTTCCTcgattaacttttttttttttttaagttgttTTTAGTTGGGTTCCCGTTATAAGGTGCTGCCATTAGCCAATGATGAGACAAACTAAGAAACACAAGCAGCTTACATAAACAGCTTACATAAACCCCAAAACTAATTACAAAGATAATTCAAGAAACCACCTGTAACACTGTAAAATGTTCACAGATAGTTTTTCACGTGTCTCACTGGCAGACCACTTGAGGCATGGAATTCCACATATTTTCACTTTCTTTTCAACATAACATTTTACTTTGAAAACTGAAAATGGGATATATATTTTCATGTATTGTTACAAATAACTGTCCTTTGAAGTATAGAAATACTATAACCATATTCTAACATTTTAAATAACTTCTGTTCCATTTATTAATGACCTCACCACAGGAATAGCCGTGTTGTGATAGAGCACCGACTTCCCCTTTTTGTAACTACTGAATAAAATCCCGGTCAATTTGTTGGAGATACTCGGGCAAGTCTCCATCAATCACAAGAGGATTCCATTTAGGTACATTTGTTTTCAGATCCTCCAAATGAATTGTGTTGTAACTGTTTGAATGGCTGTGAAAAACGTAGCCTCACTACAAGTTTATGCCTCTGTTTTGTGTGGATGTCCATCTTTCATTGCCAGTTTCTGAAGCTAGTATTCTGTGCAGAATTGGACTAGCTACCGCTACATACCCTAACAAAGTcacatagtgccactgtcctcaAGGTTTTAGTTCAACTGTATCACTGATaccatccttttttttttttttactgtgaatAACCTATCTACCATTTTTTGGGGGCAGTATGATAAGTGTGATACCAAAAGGAAAAATGAAAAACATTATGGTCAATATTTTATTATTTGAATAACAAGACATAAGTTGACCCAATATTTCTTTGaacaaaacaatttttttttttttaaatgatatgcTTTTCTTTTTATAGAACATTTCTTCTTCATTCATTTTATAAATGTTCCCTCTCGAGGTTGGTCCTGCTGCGTATGGGAAACCTTGCCAAAATGTAGACGttcctttttaaaatgttattattgttattaatatTATAATTATTGCCATTGTTGGATTCACTCCTTTCATTTTGATTTCATATTGGTTGGCTCGTTTGGTTTCTGTTTTATTTGTAGTTGAAGGATGTGAACATGTTTGCTAGAAATGTGAGAATTCTAACTAGAACGGTGTGTTGTCAGAAAAAGGTTGTGTAAAAAACTGTATTTTGACATTGAAGGAACGATACCTCAAACTGTCTTGTATTCTCCAAATGGATATTTCCTATCTTAACTCCTTTAGCAGCAGCTCAGCCACAACCATGTTAAGTTCATTTGCAAAGATGGACACTTGCCATACTAAAGTAAGCCATATAGGAGTTTTCCTAAGCCATAATACTACTGTCGTGTATTACAGTCCATACTTTGATATCAGGTCACTGAATTTGAACCTATCAACTGAGTACAGTATTTCTTGATGCCAGACGCACAACCTACCTCTTGCTAAACATTTACACATAATACAAAACACCTGAAATGTAGAGAAGTAGTGAATGAATGCTAGAACCAATGAAAAAATAAATGCTTTAATGTAAACTGCTTTTAAACTAGTTACAGACcagatgaaagagaggaagatgtgtatgtgtaccattatAGCACAACTAGAGACCCCTACAAATGGATCATTGTTTGGTTAATAAATTAATTGATCTAACGCAGAGTAAGATCACATTGTAGTTGTTTTTGTCCCTGACCTTTGAACCATAGGCCTCTGGTTGATATGACTGTTTGAATATGTCAACTGTTTCTTTAAGTTTTTCCTTCTTTCAACTGAAATGACACCTGTAAACCAAATAAAACTAGGATTATTATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268197 lncRNA downstream 13607 21500650 ~ 21500931 (-) True G234623
TU268188 lncRNA downstream 16774 21497468 ~ 21497764 (-) True G234620
TU268187 lncRNA downstream 17399 21496830 ~ 21497139 (-) True G234619
TU268185 lncRNA downstream 20753 21493224 ~ 21493785 (-) True G234617
TU268181 lncRNA downstream 26158 21488093 ~ 21488380 (-) True G234613
TU268652 lncRNA upstream 48263 21587450 ~ 21589634 (-) False LOC110513449
TU268653 lncRNA upstream 48263 21587450 ~ 21588572 (-) False LOC110513449
TU268651 lncRNA upstream 49527 21588714 ~ 21590826 (-) True LOC110513449
TU268681 lncRNA upstream 93095 21632282 ~ 21632789 (-) True G235052
TU268779 lncRNA upstream 248860 21788047 ~ 21789380 (-) True G235145
LOC110503879 mRNA downstream 45311 21457830 ~ 21469227 (-) True LOC110503879
XM_021593243.2 mRNA downstream 58566 21438546 ~ 21455972 (-) False LOC110513321
XM_021593235.2 mRNA downstream 58925 21438546 ~ 21455613 (-) False LOC110513321
XM_021593226.2 mRNA downstream 58926 21438546 ~ 21455612 (-) False LOC110513321
XM_021593230.2 mRNA downstream 58926 21438546 ~ 21455612 (-) False LOC110513321
XM_021593273.2 mRNA upstream 12231 21551418 ~ 21587320 (-) False LOC110513430
XM_021593278.2 mRNA upstream 12231 21551418 ~ 21587320 (-) True LOC110513430
XM_021593285.2 mRNA upstream 49754 21588941 ~ 21609130 (-) False LOC110513449
XR_002471999.2 mRNA upstream 72967 21612154 ~ 21619661 (-) True LOC110513497
XM_036964163.1 mRNA upstream 177666 21716853 ~ 21718331 (-) True LOC118944502
TU268194 other downstream 15706 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 44593 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 58822 21445488 ~ 21455716 (-) True LOC110513321
TU267728 other downstream 333856 21178597 ~ 21180682 (-) False G234224
TU267729 other downstream 334441 21178597 ~ 21180097 (-) True G234224
TU268723 other upstream 199658 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 205264 21744451 ~ 21755501 (-) True LOC118946878
TU269608 other upstream 1034646 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1617922 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 2232337 23771524 ~ 23780135 (-) True LOC110514600

Expression Profile