RNA id: XM_021593278.2


Basic Information

Item Value
RNA id XM_021593278.2
length 7908
RNA type mRNA
GC content 0.52
exon number 27
gene id LOC110513430
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21551418 ~ 21587320 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCGCAATTTCCTTTCCTTTTAGTTTTATAATGAATATTACCACAGCAAACATGTTTTTAAATGCATAACAATAGACTGCAGGGAGTTTCACAAATTAATAACTAGTTTGTATGTATTAGTGAAATAGTAGCGCAAGTGTCTGTGTTCTGAGAGCTCTATCGGTCTGTGTCACTGGAAGTACGACAGTGTTTTAGTTTCCCATCTCGACCGCAGGAGCTGTTGGCAGCTAACCTCCCGACCAGCCAGCAAGAAGCGGACTGATACGACAGACATCTACACTGGCTCTAATTAGAAACCGACTCCATGGTACACACGACCTCCAACATGGACGCTAAATGTCTAAATATGACCTAAGCAGGATGATATCCAAAGTGAGCAATCGGAACTGCCAGCAAGGATTACAAGaAGTTGGCAGACAGGCGGCATGACGGAGGAGAAATGCCCCCAACTAGTGGACTACTTTGTGGTGGCAGGGCTGGCTCCGGGGGGCTCGGCCCCACTGGACGAAGAGGGCCAGCAGAGAGGGGGCCGGGTGGTGGAGCCGGTCATAGACCTGGCGGTGATCGCCCGGGGCTTGGGGGAGGAGGTGCCCGAGGGCTTCACCTGCATCGAGAAGACCCAGGGGGGCCACCCGGCCGGGCTGAGCGCCGGACTCATCAACAACCCCCACATGTACCTGTGTTACCGCCGTGGGCATGACAAGCCACCCATCCTTGACCTCGGGGTGCTGTACGAGGGCAAAGAGGTGGTGAAGCAGGGCTGGAATGTGATCGAGACCACTCCCTACAGCCGCTCAGCCAGCCTGAGCTCCGGGGGGCCTGCCACCCACCGCACCTTCCTGACCTACCGCCGGGCCCCAGAGTCCCAGGCCCTCCACACCCTGGGGGTCACAGACATCTCCCTCCTGCTGCCCAGCAAGGGGGAGGTGGCCCCCCACACCTTCTGCCGGGTGGAGAAGAACCTCAACACTGGCATATGGGGTCCAGCCTTATACCTGTGCTACAAGAGAGCTGTAGCCAAAGCCAACGCCCTAGTCTATGAAGCAGgtCTGATCAGTCGGTATCCTGAAGCGGACGTGGAGTCGTTCCCCCTGCCAGAGTCTGTGCCTATGTTCTGTCTGCCCATGGGTGTGACGGTGGAGAGCTGGCCCCTCAACACCAAGTACCAGCTCCCTGTCTTCTCTACCTTCGTCCTCACCAGCGCCTGTGGCGACAAGGTTTACGGTGCTGCCATCCAGTTCTACGAGGCGTTCCCACGGGAGTGCCTCTCGGAGCGGCAGAGCGTCCGTCTGGGCCTGGTGAGCGTGGTGGACCGGCGGCCTATCACCAACCGCACCCTGCAAGTGAAGAAGAGCGTGTGTGTTCTCTCCCACTGGCCCTTCTTCACCGTCTTCCAGAAGTTCCTCACCTTCGTCTACCGATACTCCATCTCCGGACCCCACGTGCTGCCACTTGAGAAGCACATCTCCAGCTTCATGCACAACGTCCCGTTCCCCTCCCCTCAGCGACCTCGCATCCTAGTGCAGCTCTCCCCCTATGACAACCTTctcctctgtcagcctgtctcctcccccttacTGCTCAGTGGTGCCAGCTTTGTGAAGCTGCTGCAGAACCTGGGCCCTGAGAACGCCTGTGTCCTGCTGCTGGCTGTGCTGACGGAGCACAAACTACTGCTACACTCCCTCCGCCCCGACGTTCTCACCTCCGTCAGCGAGGCCCTGGTATCTATGACGTTCCCTCTGCGTTGGCACTGCCCGTACATACCCCTGTGCCCGCTGCGGCTGGCAGACGTACTGTGTGCCCCCATGCCCTTCATTGTGGGCGTCCACTCCAGCTACTTTGACCTCTATGACCCCCCTACTGACGTGGTGTGTGTTGACCTGGACACCAACACCATCTTTCAAGCAGAGGACAAGAAGCCGTTGTCATGGCGATCACTACCAAGGAAGCAAGGCAAGATGCTGGTGAATACCCTCACCAACTTGATGAAGACACTGGAGAAAATCTACACCACTGGCCAAGAGGAAGCCACCCTGGAGTTCCTGCTGACGGACTATGACCTGATCTACGGGCGTCAGAAACAGCTGGAGCTGGAGATCCAGGAGGCCTTCCTGCGTTTCATGAGCTGCCTGCTCAGGGGCTACCGCGCCTACCTGCTGCCCATCACCCAGGCCCCTTCAGACAGGACTACCGACTGCAGCTCCCTCTTCAACCTGCAGGGCTTCCTGAAGTCTCGTGAACGCACCCACCAGAAGTTCTACACCCAGCTGACCAGGACCCAGATGTTCACTCAGTTCATCGAGGAGTGCTCCTTCGTCAGTGATCGCCACGCCTGTCTGGAGTTCTTCGACGAGTGTGTCCAGAAGTCGGATGTGGAGAAGCCTGAGGAGGTGCGTCTGATAGACCTGGACGAGGCCCACAGTGGGGAGCACACGGTCTTCATCATGCCCCCAGAGGAACCCCAGGAGCCAGACGGTTCAGAGTGCCCCACTCACTATAGCTATGAGACATTCCCTGTGCTCTGCATGGATCTTTTTGACCGGCCTCAGGACCAGCTACGTGTCCCTACCAAGGGGAGTGCCCCGAGCAGCCCTGCCCCGCGACGGACTAAACAGgaGATTAAGCTGGCACAGAAGCGGGCACAGATATACTCGGCAGTGCCCGACATGTGGTCCAAATGCCTGCTGGGCCACTGCTATGGGCTGTGGTTCATATACCTGCCCACCTTTGTGCGGGCGGAGAGTGCCAAGGTGCGTGCCTTGCAAACGGCATATGAGGTGCTCAAGCACATGGAGACCAGGAAGGTGGTACTACCAGATGAGGTGTGTTACAGGATCCTGATGCAGCTGTGTGGGCAGTACGGGCAGCCTGTGCTCGCTGTTAGGGTACTTCTGGAGATGAAGAAAGCTGGGATCACACCCAACACCATCACCTATGCATACTACAACAAGGCAGTGCTGGAGAGCAAGtggccctccaccaatcagggtgGCCGTCTGCGCTGGGCCAAGTTGCGTAACGTTCTGATGGCCGTGGCGCAGTTCAGACAGCCAATCAAACAACGGCTGAAGAGTGGTTCAGTACGCTCGCGGACAGATACAATGGACAGTAACCAACGGTCCCGCCCACAATCTAACCTGATTCGTCAGTCCAGCTGGAGCGGCCTGAGTGAAAGCTCCAGCCACGAATCGCTGACGGGGTCTATGGTGAAGAGCAACAGCCTGAACAGCATGAGAGGCTCAACAGACAAGTCTAAGCTCTCAATGAAGGCGGTGCTCCGGAACCCAGGTGCCAATGGCTGCAGCAATCCTGCCTCCCGTAAGCCCCCTGTGGGGCCACGAGACACCTCCACCCCTTCTCCCTTTCCCCCTGGTGGTGTCCTGGTGCGCCGCGACCAGGTGTGCCTGTCCACCTTCTACAAAGACTGTGCCGAGACGACCGTCTCTGACCCCAACTGCAGCTGCCAGCCTGGGGAGAGAGATGGCAGGCCACCTGGGCCGAGAGACACCGTGAGCCGCAAGGCCGTGGACGAGAACTACAATAATGTGTCACCGCAGAGTCGGGGAAGCCTGGCAGGGAAACTACAGCAGCTGCTCACACCTACTCGCCATCGAGTCTCGGGGCGGCGGGCCGCAAGTGTAGACGCTCGGCGCTCGGGGGGTGAAAACGGGCCGGTGCGCAGGGTGTCGGAACAGAGGCCGTCCCGAAAAGCCCAGGTGGCTGAGAGCCTGCTGAAGGCTAAGGAGAGGCTCTACACTGCTACCTCTGAGAGTTCTCTGTCGGTGGGGAGTGACGTCGACCTCCCTGAAACCACCAATTTGGCCTTTCCTCTCCGCAAGTCCTGGGACACCAACCAAGAGGGAGCAGGACTAGAGGTGTTGATGTCGAGCTGCTCCCTGTGTCGGAGCTGTAACTCCCTGGTCTATGATGAGGAGATAATGGCCGGGTGGACGTCTGACGACTCCAACCTCAACTCCAGCTGTCCCTTCTGCTCGACCACCTTCGTCCCCCTTCTCAACGCTGAGATCTGTGACCTAGGACCTGTCAGCAGCCTGGAACGTACCAATTGGAACATGGACGAGGAGGTGGATAGCGCAGCCAAGTCCCCTGGTGACCTGGAGGCCATCCTGGGTCACAACGGTGTGAGTGAGGACTCCAGCTCTGAGACCAGCAGTTATTCTGAAAGCAGCAGCGCTACCATGGGATCATCGGTGGGCGGGTCGCCCCAGGTGACGGTGGCCTACCTGAGCCCATTGGTGCTGCGCAAGGAGCTTGAGAGCCTGCTGGAGAACGAGGGTGAGGCGGTGCTGTCGCAGGGCCAGCTCCTGGACAGCCACTCTATCATCTTCTGGAACATGGTTTGGTACTTCCATCGCCTGGGCCTGCCCAGCAATCTGCTGCAGCTGGTTCGCTCCTCACCGCTGGCCAACCAACTAGCACAGACTTCAGAGAACTCAGCAGTGAGGGTGAGGCTGCTGTGGGACACACTGACCCCTGACACAGACTACTGGCCCCCCCTCTACATCCTGTGGAGGATACACAgtGGCGTACCCATGCGGAACCACAGCTGGCGGAGGCACAACCACCCCTTCACCCTGGCCTTCCTGGAGGAAGTGCTGCGCTGGGTCGGCATGAACGAGGTACACAAGGGAATCACTCTCTTCCTGGAAACCATTGCCAAGCAACCAGGCACACCCAAGATACAAAGGAGTCTGTACAGAGAGATGCTCTTCCTCACGCTGGCTGCCATGGGTAGAGATCACGTTGCTGCGTTTGATAAGAAATACAAGGCTGCGTACCAACGGCTGAGTGGCTCCTTGGGCCGCGAGGAGCTCCGCAGGAAGCGAGCCCAGCCACCTAGCCCCAAGGCTGTGGACTGCAGACGGAGCTTCCTTCTGCCCCTCGAGTGCTAATACCACCTGCAGGCTCCACCCACTCCAATCCAGATCCGCCCCCATCGCTGCTGCCTCCACTCCCTAGAACACTGATACCCAGCTGCCAAGAAGAAGGGATTGGAGAAGTTAGACCAAAAACAACAGACAGATAATTCTGCCTTCACTTTGGACTTCTCCATTGTGCTGCCACCTAGCACAGCTTGGCCACACTATAAAAGCCCCCTGACTGTGTAACCACACCTCACTATCCTTGTTTATGTGAACCCGATATCTACATTTGACCTTCATTAATTTCCATTGTGCAACTGGCCTTTGGACAGCTTCCTCAATAACTAACAACCCTCTCGTCCTATAGTTTGGCTACAGGGATTATTGGACCTGGTACATACAGCCCAGCCCCCTTGGACTTTGCTCATTGCTCATATATACATGGCCTCTGCCTCACCAATATAACTCATACTGGTTTGTAGGTCATAAACCATGCATTTCATTCGTATGCAACATGTAAGGCATATTACCGACCTGCGATCTATGCATTCAATGTGAATATATTCTATAATTTGCATTGCTTTCAGACAGAAAATCTCATGAGTGGGAGATGTCTAGTGATCCTTGATGTGATGGGAAGTGTCTATCATCGAACTGTAACATACATTACATTGCAAGGGTACATACCAATCACTCAGTCACAGTCAAAACCTTTAGATTAGATCGCATTTCATGCCTCTCTTGCTCTTTTTCACCCTCTGGAATGAATTCTGTCAACTGGACACTGCTTCAGCAAGTCAATCCAAACGAGGATGTTTACTCTGGGAGAGGATGATATTGAATATCGACTTCGGGTGAGGATATCTTCGGGAGGATTATGTCAGCTCAGATGTCGAATCTGGGAGAGAATTATGTCAACTAAGAAAGGATGATGTTGACTGGGAAAGGATGATGTCAACTCTCGGAAAGGATGATGTCAAATCTGGGAGATGATGTCAACTCTGGTAAAGGAGGATGTTGACTGGGAAAGGATGATGTTTCCTATTGATTTTGGGAGAGTATGATGTTAACTATCGGTTTTGGGAGCAGATGGTGAGCTGTGGGGATCAGCAATGTAATGGTTTGATCACTATCACTATATGGTTtccttagtgtgtgtgttttccagctCATGGTGTGGAATGGAGCTATGGTCAAACTTTGGGTATGGCATGAAATAGCCTATGCAGAGTCGCCAGAAATGCTAACATCCGGTTGtcagggatacagtattttcAACCTGACGGAAGTGGGAACTCTGCTCAGGCATCTTTCTATGCCTGCAACATTAGGTTAGGCAGGAAGTGGAGGGGGTGTGACTGGGAACAGACACTGACAGTCAAGGAGAATCCACGAGTCCTATAAAACCCCAGTCCTGCGCCCCTACATCACAACCAGGAAGGACTTttcatacatggacacacatacaTATTGCATACAGGATTTATCAGTTGTATTGTGTTTTTAATTCCCTGTACTGTTCTTGTGAATTTGAAGTGTGATTGGGGGTTCTCAGTTCAAGAACTGATTCTCAGAAAGTGGCTGACAGAAGAATAAAAGAAAAACGTGTAGAAGGGGGGTTGATTATGGTATGTATGATGTCATGTGTGTTCTCATGTTTTATGCGTATTTACCTCATCTCATACCTCTTTTCCCGTGTTAAACGGGAGTGATTTGTCTGGGAGGATGGTCCACAAGGAAATGACTGTGATGGACCTTTAGTAGTAGTAGAATGTGATGGAACTTGAGTCACACATCACCAGTTTTTCATTCACCACACATTTAGGCCAGTAGTGGGTTAAGAATTTTTGGCAGAGATCAAAGAACTTTAGAAGATCCAGTTGAGTGGAAGTGTTTAAGGAGAGGAAGGTACTTCACTGTGGAGCACATACTTACCTACTAGGTTCTTGTTTTCATGTACAGTACCTGTGAGGCCTTTTCCCCTCTTATTTGAACACTTTATTTGTTGTTCGACTTTGTATATGAAAACAAATGAATTGCACAATGGACTTTTCATTTTCTTTCAATTTCATATGATGTTGCCACACTGTTAAATGCCTCTGTTACCGTCATACCTTGTTTTTGATCTTGCAGTGTTATATAGCAGCGTCACGAGAGAACGCCTTGTGTTCTGCCTTTGAAGATTGTGTGAGTGACAGAAATTATTGTCCCCACCTGGGGAGTAAAGCTGTATTTACAACTAGGGATGTGAAGTTGTAGCGAGAACAATTTTCAGATCTCATATTTTAGTCCTGAGGGTGAGATATATTTCAGATGGCACTGATATCATTGTGAGTCTACCCATATATCATTAAAGTACAAGGGAGACATTGTTTGCACACAGCCATCCAGTCAACAGGGATATACAGACTGGAGCAAAGCATTGAGTATTCTCAGCCAGTAGAGGGCAGTAGGGCATGCAGAGTCCAGTTCTAGCCATTGGTAGGGTGAATTGGGCTTGATCATGCTAAGGCAACCCTGGTCTTGGAATTGACACGTCTTTAGTAATAACATGGTGGGAACCTGTTTATTCAAATTGCCTATCAGTGGTCATGATGTAAAGGAGACCCAAGAGGGAATGCTGTTTAAAAGTTAAGACTTGAGTTATCGTCAGCGTCTCTAATTACACCCTATTTGGCTCTtggtcaaaggtagtgaactGTATGGATAGTAGGTTGATAAAATGGTGTATATTTTGAGATTTCCCAGCCCGAAGTTAGATTGTAAAAATAAGGTAGGTAGATTTGTTCCCCAACGTAGGCAATATTACATTTATGGCCACTATTTCAATGCACCGGACTGCAAGTGAATATAAGGGACATTTATATTGTCTGTTCCTTTATTGGTCAAGTGAGCAAAGAAATTAAGAGAGGATATCTGTATTTAAAATATATTGTGTTTGCTGTTGTAATTTATATGGATGTGACTTCAGTTGTAAATGTCTTGTTTTATAGAAGGAAAATACAAACAGATTCCCCAAA

Function

GO: NA

KEGG:

id description
K20163 DENND4; DENN domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268197 lncRNA downstream 50487 21500650 ~ 21500931 (-) True G234623
TU268188 lncRNA downstream 53654 21497468 ~ 21497764 (-) True G234620
TU268187 lncRNA downstream 54279 21496830 ~ 21497139 (-) True G234619
TU268185 lncRNA downstream 57633 21493224 ~ 21493785 (-) True G234617
TU268181 lncRNA downstream 63038 21488093 ~ 21488380 (-) True G234613
TU268652 lncRNA upstream 130 21587450 ~ 21589634 (-) False LOC110513449
TU268653 lncRNA upstream 130 21587450 ~ 21588572 (-) False LOC110513449
TU268651 lncRNA upstream 1394 21588714 ~ 21590826 (-) True LOC110513449
TU268681 lncRNA upstream 44962 21632282 ~ 21632789 (-) True G235052
TU268779 lncRNA upstream 200727 21788047 ~ 21789380 (-) True G235145
XM_036971866.1 mRNA downstream 12231 21514538 ~ 21539187 (-) True LOC110503882
LOC110503879 mRNA downstream 82191 21457830 ~ 21469227 (-) True LOC110503879
XM_021593243.2 mRNA downstream 95446 21438546 ~ 21455972 (-) False LOC110513321
XM_021593235.2 mRNA downstream 95805 21438546 ~ 21455613 (-) False LOC110513321
XM_021593230.2 mRNA downstream 95806 21438546 ~ 21455612 (-) False LOC110513321
XM_021593285.2 mRNA upstream 1621 21588941 ~ 21609130 (-) False LOC110513449
XR_002471999.2 mRNA upstream 24834 21612154 ~ 21619661 (-) True LOC110513497
XM_036964163.1 mRNA upstream 129533 21716853 ~ 21718331 (-) True LOC118944502
XM_036971926.1 mRNA upstream 157105 21744425 ~ 21755710 (-) False LOC118946878
XM_021593347.2 mRNA upstream 169337 21756657 ~ 21760649 (-) False LOC110513558
TU268194 other downstream 52586 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 81473 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 95702 21445488 ~ 21455716 (-) True LOC110513321
TU267728 other downstream 370736 21178597 ~ 21180682 (-) False G234224
TU268723 other upstream 151525 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 157131 21744451 ~ 21755501 (-) True LOC118946878
TU269608 other upstream 986513 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1569789 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 2184204 23771524 ~ 23780135 (-) True LOC110514600

Expression Profile