RNA id: XM_021593285.2


Basic Information

Item Value
RNA id XM_021593285.2
length 5400
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110513449
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21587450 ~ 21609130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcccctcttgtCCTCCCACAAGTCAGATGGTTTCGACTAGCTAGTTACTACAGACATAAAGTAAAAATGGGCTTTATCGtacaaattcatgaaaacaaaaaataGCTTTTTGGTGTTCGTTTAAGGTTAACTGTGTTGTTCATGTTAGgttcaaaataacattttaagaagataaattgtagaaataggcggccCTTATCACTTTGTGGCTATGGTAACTAACGTTCGTGACGACCAAGTCAGATCATCCCACTGCGTAAAGTCGTTCGGCAAAGATGTCTGCTACGGATGTAGGCGGTTGTGGACCCGGAGCAGGACCCAGTTCGGGTGCTGGGTCCGGGGCATCAAACCCTCGAAAATTTAGCGAGAAAATAGCTCTACATACCCAACGTCAGGCTGAAGAGACTGCCGCTTTTCAAGAGGTTATGATGGACATCACCTCTACCAGGATCCAGGCTCAGAAAGTGCGTCTGGCTAGAACCCAGGGCCCGTACTATGGGGGCTCCCTACCCAACGTTAATCAGATCGGCAGGAACCCAGGCGACTTTCAGGGTTTATTCCACTCTAACCTGGACTCCAGTCGCTCCACACGGCACCATGGCCTGGTAGAGCGGGTCCAGAGGGACAGACGATTCATCTCCCCAGTGCGCCCCTACAGGAGAGTGGACAGCTCTCCTTACAACTCAGCCTATCTGTCCCCACCTCCGGACACTAGTTGGAGAAGGAACTGTTCGGGCAACTTCCCAGGAGACAAAAGCCAGTTATTTCGCCTCCCCACCATGGCACTCAACAGGACCAACTCAGACTCTGCCCTCCACACCAGTGTGATGAACCCCCCTGCAGGAGACCCCTTCAGTGCTGGACACACACTCACCCCTCAGGGCAGACTCACAGGtcagagtgaaggagaggggagaagaaTGTTTCCGTACCCAGTTCCCTCCATTGAGGAGAACGTTCTGGATCAGGGCATACTGCTCAAGCCCTGGGACACCAAGAAGTTGCCCCTGCTGTCTTCTCGACCCAAGTCCTGTGAAGTTCCCGGTATTAAtATCTTCCCCTCCCTGGACCAGCACTCCAGCACCCCCCATGCCCCCTCAGCCCTGAACACGGGGGGCTCCCTGCCCGACCTCTCCATCCTGCACTTCCCGTCGCCGCTGCCCACCCCCCTGGACCCAGACGAGCCGGGCTACCCCTCGTCCCTGAGTGGGGGCAGCAGCACTGGCAACCTGGCCACCACCCTCACCCAGCTGGGCATTAATGCCAGCAACGCCTTCCGCCACTCGCCAGGTCTCCTGGCATCTCTTCAGGGCACTCTCAGTAACCCCTCCTTGCAGTCCTCGCTAAGCAACCCCAACATCCAATCATCTCTCAGTAGCCACTCTTTCCCCAACTCCCTCAGCTCCACCTCCTTGCACTCATCGCTTAGCAACCCGTCCCTGCAGTCCTCCCTTagttcctccccctcccttcagTCTTCCCTCAGCAACCAATCCCTGCACTCCTGCCTCAGCAACTCCTCCCTGAGTGGCCAGTCCCTCCAGACCGCAGCCAGTAACCCTAGTTACAGTAGCGGGGTGGGAGGGTCCGGCTCGTGCGCCTCTTATTCGCCATTGTTAACTAGCCAGGGGCAGTCGCCTCTCAGCACGTCGCCACGGAGACGAGCTCAGCTCTCCCCTCTGATCCTACCCATGGGAGGGGAGTCTCGCCGGCACCACTCCAAACAGTtctcccccaccatctctcctaacTTGTCCTCCATAACACAGGGCGTCCCTCTGGACACCAGCAAACTGCCCATGGACCAGAGGCTCCCTCCCTACCCCTTCAGCCAACCTCAGCAGCAGCTTCATCAGCCAGGTCCTCCAACATCCCAGCAGGCCTCTCAGGCAGGACAACAGCTCTCCCAGCCGTCCGTggtactacaacaacaacaacagcagcatcaacaccaacaccatcagCTGCATTTGCAATACCAGCTGCACCAGCAGCAACGTGCCCAGTCTCAGCAGGCCCTCCAGCAGCTGCACCTGCAGAACCTGCGCAATGTCCagaaccagcagcagcagcataggGTGTCAGTCAAAATTGAGAAGCAGGGTGAGCAGGGCCAGAACTCCCAGTGCCTGCAGACGCAAGACCTGCAGTCGACCCAGCaacagcagcaccagcagcaacagcaacaggACCAGCAAGACCAACAGCAGCAGATGGAGCAGCAAAGGCAGCAGGGAAGTCTTCCCCAGCTGCAGCACATCAGCCACTCCCTGGCCACAGACCTGGGCCTCTACAATGACACATTACTGTTAAACTCTCTGTTGAATGATCCCTACCTGGGCCTGCAGATCGCCTCCAGACAGAACCAGCAGTTCAACATGGAGACTCCGGGAGACAGCCTGTCATTCAACCATGGTGGCTTGGGCTGTGGGAGTGGTGGAAAGGACCAGGAAGAATCCTACCACTCCAACCATGGCTTCCTGGAGCTCCACGATTCAGGGGATAGGCAGCACCTTAACAACCAGAACTTTGGGGGAGAGGGATGCCACAACGTCCCTAACATCATCCTCACAGGAGACAGTTCGTTGGGCCTCTCCAAGGAGATCGCCAGCGCCCTGTCCCACGTGCCAGGGTTTGAGATGGACTCCTTTGCCCTGGACGACCCCCTCAGGATGGACCCCCTGGCCCTTGAAGGGCTGGGCATGCTGGATGGGGACCTCATGCTGACCGACCCCGCCGTGGAAGACTCCTTCCGCTCCGACCGCCTCAAGTGACCCCTCCCCGGCCTGGAGTGGATACTGAGGAGTGCGGAGGGAAGGGGCTTGGAACAACCCCGGGCTGAAGCAGAACAGGTGGGGTTGAGCCCTGCTTTGCTTCCCCCTCCTTGGCGATTGACCCAACCACAGGATCTGCGAATACGAGGTCAGGTCCCGGAGAGAAACTGGGGAGCAGGCTTTCGATCCACTATAGTACTAATACACCTGTCAAATAATCAATTAATCACAGTCTTCAATCTGGACCTTGATTATTTGAATTGTGTGTGTTAGTCCTGGATTTGAATAGAATTCTACAtgctctccaggaccagagttgGAGGCACCTGGTCTAGTGGGGACCTCTCCACATGCTTTTTGTgaggtgatgtggtggtggggaagGTTGGAGGACAGGACTGACATGTCAGTGGTGGAGCAAGTTTATTAAAGGTTCTTTCTGCTACATCCAGGCATTTATTGAAAACGCACTTATGATGCttaagagaaaaaaagaaaatatcGGCATTAGCTTGTACGAGTCTTATCTGCATGTAAACAAATGCACTTCGGATAATGCATAAATGCAGGGATCACGCATGAGGTCAGTTACACTTGAAAATGCCGTCTTGAAAACCATACAATATGCATTCTATAAGACAGGACTTTTCCGACTGGTATTTTGGCTTTGTCTGTCGGTGTTCCATCATTCCAACGCCAGTATGGGGAGGCTGGAATATCAGCTATGTTTGCCATCATTCTACTGCAAGAACATACAGTAGATCTGGGGTATTTTATGGATTACATCAACCCAACCAGAGACTGTTCAACCAATAGTGGCCAATTGACATGTCATTAATTGTTTCTATTTTATTGAAGTTTAGTGAAGGTAATTCAATGGCGGACCTTGCTAGCTATAgttcagatagagttcagtgtttcAACGGACAAAGAGAAGAAAGTGTGTTTTTGGAGAGGTGACTTTCTCAGTCCCTAGGGACAAGTTGGCACTTACGGGGCCATTTTAGTGTCTGGACAGCATATTCGTCTGTAAGATTATCACTGTCTGTGTTCTAGGCCCAGCTAAATTGACCTTTCTCATTTGACGTCTGTTAACTTGAATCGTCTTGATCTTTCCGAATCTAAAAAATAACTAAATCGATCGTCTAAGGATATTGTCCTCATATTGAATCAAGTAGTCCTTAGAGTCCATTATCCTGTCTATTAAAAACAACacataaaataacacatttcactgcacctatctggtgtatgtgacaaacatttgtgtatatatatttttttatatatgtcCCAACATGGCAGCTGTTGCCATTCTGCCAGCCTGCTTCTATACCATGGAGTTTAAGCCGAGGACCTTTTGCTATGTACCACCCCTGTGTGCCTGCTATCCTGCTAGCTCCCCCTTAGATCTTAGACCTACTTCTACACATTCCCTTTGAAGGGAATGCAACATTTTTGCCATAGTATGTATTGTAACTGTTACTACTATCCTAAGGCCTTGGAGCTTTAGTGTCCGTTTTAGTCAGGTAATCCTAGCCACTGTGATTGACACCTCTAACCCCTCCCACCTGCTGCACCTGTCTTGCCACAGCAAGGGCCATAGCCAGATTATAGTAACATATTTTTATGTAACAAAGTAGTTATTACTATgaagttttattttttaattaaaggTGGTCTTTGTATATAAATGTATAAATAACTGAATATATTTAAGTAGAGAAGCCGTTTGGTTCCGCAACACCTTGAAACCGGTTGCATGATTTGAAAAGCAACAGATTCTGAACAATGTAGTCCATTTGCTATGCAAAATGTTCTTGTGCATGTCTTGTGACTGTCTGGGAGTTGTCAAATACAATTTTTCAGATAGTACATTTGCATCATACTATTGTAgcgaaaatacattttttgtaaaatatttttttgcgtTTTTAAATGGTCATTTTGCTTTTGTGACAATTTTTGATATTGGTGTCTAAAGACTACTGTAAGTTTGACATTGTGTGGCAGCAACAGGAAGTTAGAGCGCTTGAGATAATATCGTTTAACTTTCATAATGACAAAGATTATGGAAATCAGCCCTTCTTTCCAGTGTGGACTGAAAGAGGCCATGTTTGACAGACTTAATAAAACACAAGCGTTGCAACTTGGATATAGAAAGCTGTATGCAACTGTTACATCATAGATTTGTGGTAACATCCATCCTAAAATGAAGTAGTGCTGTTCTGAAGTTGTGCTAACATAGAGTTTAACCCCCTTATTGACAGATATTGAAGTACCTCTAATTACCGGTATGCTTTATTTCAACCATATTGCTTTTACACTGATCATATGAGCCAAATGCAAATCTGTTTTGACAGGGAGTGGTGGTTGAAGTGGTTTGAGTATCAAACCTATGGAAAAACCCATTCACTACGGCCTCCTATCCAACAGTAATAGTGTGGGTTTGCAAAGTCCCCTTTTACCACTGTGAGCCAATGTTGTGCCTTGGTGTATATCTTGCTTCTTACTAGGCTGGTGGTATTGGCAAGACCACAAGTCGTTTTGAAGAGCCATAATAATGCATTTCCAATTTAGCCATTAATGAGGGGAGGTATAAAAATAAAGTTAGCGTGAAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268653 lncRNA downstream 369 21587450 ~ 21588572 (-) False LOC110513449
TU268197 lncRNA downstream 88010 21500650 ~ 21500931 (-) True G234623
TU268188 lncRNA downstream 91177 21497468 ~ 21497764 (-) True G234620
TU268187 lncRNA downstream 91802 21496830 ~ 21497139 (-) True G234619
TU268185 lncRNA downstream 95156 21493224 ~ 21493785 (-) True G234617
TU268681 lncRNA upstream 23152 21632282 ~ 21632789 (-) True G235052
TU268779 lncRNA upstream 178917 21788047 ~ 21789380 (-) True G235145
TU268801 lncRNA upstream 196400 21805530 ~ 21805751 (-) True G235165
TU268793 lncRNA upstream 274109 21883239 ~ 21919236 (-) True G235157
TU268790 lncRNA upstream 275656 21884786 ~ 21891946 (-) True pmvk
XM_021593273.2 mRNA downstream 1621 21551418 ~ 21587320 (-) False LOC110513430
XM_021593278.2 mRNA downstream 1621 21551418 ~ 21587320 (-) True LOC110513430
XM_036971866.1 mRNA downstream 49754 21514538 ~ 21539187 (-) True LOC110503882
LOC110503879 mRNA downstream 119714 21457830 ~ 21469227 (-) True LOC110503879
XM_021593243.2 mRNA downstream 132969 21438546 ~ 21455972 (-) False LOC110513321
XR_002471999.2 mRNA upstream 3024 21612154 ~ 21619661 (-) True LOC110513497
XM_036964163.1 mRNA upstream 107723 21716853 ~ 21718331 (-) True LOC118944502
XM_036971926.1 mRNA upstream 135295 21744425 ~ 21755710 (-) False LOC118946878
XM_021593347.2 mRNA upstream 147527 21756657 ~ 21760649 (-) False LOC110513558
XM_021593341.2 mRNA upstream 147527 21756657 ~ 21760819 (-) False LOC110513558
TU268194 other downstream 90109 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 118996 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 133225 21445488 ~ 21455716 (-) True LOC110513321
TU267728 other downstream 408259 21178597 ~ 21180682 (-) False G234224
TU268723 other upstream 129715 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 135321 21744451 ~ 21755501 (-) True LOC118946878
TU269608 other upstream 964703 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1547979 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 2162394 23771524 ~ 23780135 (-) True LOC110514600

Expression Profile