RNA id: XM_021593293.2


Basic Information

Item Value
RNA id XM_021593293.2
length 2571
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110513472
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21619725 ~ 21624474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGACTTCGGGGTTATTTGACGATTATGAACTGCACAACGTCGGTGTAAATATACTGATTTATAAAAGAGACAAGTTTTTGCATTATGGCATAagtaagaaaaagagagaaatccATATACTCTATCAGTTAGTGATTTTAGAGCCAACAGGTTGCGCTTAGGCGACGCACATCCGCCATGGTTATTCGCCCTACGGGATGATTGACATAAGAATTGCCAGCTGGATTTTTGGGAGAAATGCGTCTTACACTGGTTGATCTTTAAATACTACTCGTCTGCATTTTTCTCCTCTGGTTGGGCCTACTATTGTTGTAATGCTCTTGAAGTAGACCTACATATATATTCTGAACAACATCGCTTCTGAAAACAGCAGCAGACAAGACATGGATGTAGAGAATGGAGAGCTGTTTTTCGGACACAAGGAGGACAGTATGACAGAGGAGAGTTGGGGACTGGAAGGGCCATTTTCTTGCTCTGATGTCATCTATGCTGGCTCTGAAAAAACCCTGGATGAATGCACGGGTCTAAATGACAGCGAGCCAGAGGATGTGCTTTATGCCATCAACCCAAATGATGTCTTCCCTACCAGAGCCCTAGTGGAGACCTCCTCAGAGAGCGACAGTGGCATCTCTGAGGAACCTTGCTCTGAGAGCCCTCTAGCTGCCACGGTGGACCCCTCTCAGGCCCCCACAACTATCTATCAGGTGGTCTATGACATCAGCACCCTGGCCAACATCAAGACGGAGCCAGAGCAGCATAGCGTCGATGTCATTTCCATAgaactcgATGAGTGGCGTTCTCAGATGTTGATCTCGGAGTCCTGTATTGTCAACGAGTTACCTCAAGTATCCGCTGGGAGATTTGACCATGGTCACCTTTCTACCCACTCTGCTTCCACCTCAGGCCCCACCAGTCCAGACAGCCCACTGCTTTACCCTGATCTCACACTGACTGAGGAGGAGCAGAAACTGCTGAACCAAGAGGGGATCTCTCTGCCCAACAACCTGCCCCTTACCAAggtcagacacacacgcacgGCTGAGGAACGGATTCTGAAAAAAGTGAGACGCAAAATACGCAACAAACAGTCAGCCCAGGACAGCCGTCGCAGGAAGAAGGACTATGTGGATGGGCTTGAGAGCAGGGCAGCGGCTTGCTCAGCGCAAAACAAAGAGCTGCAGAGGACCGTGGAACAGCTGGAGAAACACAACATGTCTCTCCTGGCTCAGCTGCGCAGACTACAGTCACTGATCAAGCAGACGGTCACTAAAGCAGCACAGACCAGCACCTGCGTCATGATTATCCTCTTCTCTCTGGGCCTCATCATCTTCCCAAGTTACAGCCCCTTCAACTGGGGCACCTCATCCATAGAAGAGGACTATACACCAAAAGGGGTTATCTCCAGAAACATCCTCACAGATCCTGCTTCATCCTTGCAAGCTGCTGAGGATGTGGATAACCATATCATTCGGCCAGATTCCCTACCCGTTTCCCGTGACCTCAGTCAATCAGATCCCCCGGATGCTTCCAGAATACTAAAGCAACCAATAGAAAGTCCCAAAATCACTGACATTGAGGGTGTGGTCCTGGAGGagagccaaccagggaacagttcGACTCTGGTTGACGGGCAGACTGAACCTCTGGCCCTGGGCCTGGTGTCAGCAACAGGAAAAGGGAGCACAAGCCTTGATCCCACCAAACCAGCCCACGCTGatgagatgtagacagtgttGATGAACTAGTTTGACTGCATTCCATTTGCTTTATAGAGCTCTTCAAAGCTCCTTGCCTTCATTATGGACAATGGGAGGAATATGCTGGGGCAGTCCAATATGCTGCCCCATTACCACATTGGTTTTCAACCAGACCCCTTTGGGTGCCTTCAATGCCTAACCATTGCCTTACTCTTTTTTTGGTGCTGTGGTGCAAACAAGGTTTAATCTGGGATTCGGTGGAATGGTCTTCAAAATGGGTTAAACATTTTTGACTTTTCTATTTAAGTACCACTTCTTAATGTTTGTATGGAAAGGGTTTCTAACTTTGAACTCCGAGGAGTTAGTTAGTACATTCTGTGGGAAGGATGAAGGTTGTTAGATTGTAGCTGGAAAAACACCACAGATATGAATATATTGTTTTGGCTATGCATTCTTTCAGCAAGTCTTAgtgtacaccacacacacactccttgaaAGTGAGCCTACACCGATGGATTATATTTTTGACTAACTACCTTACTCGTGTGTACATTAACATGTTTGTGAAACTGCCTAGCTAGTTTCTGACTGGCATCTGTGCTCAATGTAGTTTGCAGCTCCCATAACTGAATGCTGAGAGACTCATTTTGCACTGTAAGCAAACTGTCATATCTTTTGCGTGTACTTAAAAATGTCCTTTGGCCCTCATTCGGTTAAGAGATAAACAATGTGTACAATCCAAACATATCCTTATCTTAAGCATGACATTGTGGTCCAAATGTATACTCTTCACAGAACTTGCTATCCTAATTTTAGTGGTTGCTGGTGTCCTATTTTATGTGCTTTATATTTATTAAATGGGAACAATACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268254 lncRNA upstream 31923 21587443 ~ 21587802 (+) True G234677
TU268229 lncRNA upstream 65184 21551421 ~ 21554541 (+) True G234654
TU268038 lncRNA upstream 117812 21501342 ~ 21501913 (+) True G234500
TU268042 lncRNA upstream 121823 21497532 ~ 21497902 (+) True G234504
TU268035 lncRNA upstream 133535 21485989 ~ 21486190 (+) True G234497
TU268365 lncRNA downstream 136663 21761137 ~ 21761338 (+) True G234775
TU268390 lncRNA downstream 179409 21803883 ~ 21804116 (+) True G234799
TU268403 lncRNA downstream 241319 21865793 ~ 21867110 (+) True G234812
TU268404 lncRNA downstream 243310 21867784 ~ 21868301 (+) True G234813
TU268408 lncRNA downstream 256577 21881051 ~ 21882985 (+) True G234817
XM_036964154.1 mRNA upstream 122451 21493159 ~ 21497274 (+) True LOC110513414
XM_021593244.2 mRNA upstream 136209 21472944 ~ 21483516 (+) False LOC110513388
XM_021593253.2 mRNA upstream 139742 21472944 ~ 21479983 (+) False LOC110513388
XM_021593210.2 mRNA upstream 212528 21390417 ~ 21407197 (+) False LOC110513285
XM_036971923.1 mRNA downstream 7866 21632340 ~ 21643258 (+) True LOC110513504
XM_036971924.1 mRNA downstream 24967 21649441 ~ 21713248 (+) True LOC100136306
LOC110503897 mRNA downstream 95771 21720245 ~ 21733022 (+) True LOC110503897
XM_021593324.2 mRNA downstream 108633 21733107 ~ 21737376 (+) True pdia7
XM_021593310.2 mRNA downstream 114036 21738510 ~ 21744261 (+) True LOC110513517
TU267870 other upstream 332723 21286726 ~ 21287002 (+) True G234340
TU267841 other upstream 355219 21264075 ~ 21264506 (+) True G234322
TU266973 other upstream 1011000 20608293 ~ 20608725 (+) True G233545
TU266948 other upstream 1054013 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 1775073 19827130 ~ 19844652 (+) True LOC110512505
TU268500 other downstream 393120 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 434068 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 434205 22058679 ~ 22068080 (+) False LOC110503910
TU269077 other downstream 680019 22304493 ~ 22304906 (+) True G235426
TU269168 other downstream 836066 22460540 ~ 22472917 (+) False LOC110514034

Expression Profile