RNA id: XR_005051423.1



Basic Information


Item Value
RNA id XR_005051423.1
length 136
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC118964374
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21743721 ~ 21743856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcatggATGAATTCTGTGTTACCTTGTCTGTTGTGAATGCAGTCAGACACCATGCAATAAGATTTTCACTTCTACTACTCTGAAGGATGAGTGCTTCCCAGTGCCTTATCTCCTTCACATCAAAGTGAATGCAATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268254 lncRNA upstream 155919 21587443 ~ 21587802 (+) True G234677
TU268229 lncRNA upstream 189180 21551421 ~ 21554541 (+) True G234654
TU268038 lncRNA upstream 241808 21501342 ~ 21501913 (+) True G234500
TU268042 lncRNA upstream 245819 21497532 ~ 21497902 (+) True G234504
TU268035 lncRNA upstream 257531 21485989 ~ 21486190 (+) True G234497
TU268365 lncRNA downstream 17281 21761137 ~ 21761338 (+) True G234775
TU268390 lncRNA downstream 60027 21803883 ~ 21804116 (+) True G234799
TU268403 lncRNA downstream 121937 21865793 ~ 21867110 (+) True G234812
TU268404 lncRNA downstream 123928 21867784 ~ 21868301 (+) True G234813
TU268408 lncRNA downstream 137195 21881051 ~ 21882985 (+) True G234817
XM_021593324.2 mRNA upstream 6345 21733107 ~ 21737376 (+) True pdia7
LOC110503897 mRNA upstream 10699 21720245 ~ 21733022 (+) True LOC110503897
XM_036971924.1 mRNA upstream 30473 21649441 ~ 21713248 (+) True LOC100136306
XM_036971923.1 mRNA upstream 100463 21632340 ~ 21643258 (+) True LOC110513504
XM_021593298.2 mRNA upstream 119247 21619725 ~ 21624474 (+) True LOC110513472
XM_036971929.1 mRNA downstream 29812 21773668 ~ 21789374 (+) True LOC110513574
XM_036971927.1 mRNA downstream 46477 21790333 ~ 21845588 (+) False arhgef2
XM_036971928.1 mRNA downstream 46477 21790333 ~ 21845588 (+) False arhgef2
XM_021593382.2 mRNA downstream 57079 21800935 ~ 21845588 (+) False arhgef2
XM_021593372.2 mRNA downstream 68465 21812321 ~ 21845588 (+) True arhgef2
TU267870 other upstream 456719 21286726 ~ 21287002 (+) True G234340
TU267841 other upstream 479215 21264075 ~ 21264506 (+) True G234322
TU266973 other upstream 1134996 20608293 ~ 20608725 (+) True G233545
TU266948 other upstream 1178009 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 1899069 19827130 ~ 19844652 (+) True LOC110512505
TU268500 other downstream 273738 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 314686 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 314823 22058679 ~ 22068080 (+) False LOC110503910
TU269077 other downstream 560637 22304493 ~ 22304906 (+) True G235426
TU269168 other downstream 716684 22460540 ~ 22472917 (+) False LOC110514034

Expression Profile