RNA id: TU268720


Basic Information

Item Value
RNA id TU268720
length 2650
RNA type TUCP
GC content 0.43
exon number 4
gene id LOC118946878
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21744425 ~ 21755710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAATATTGTTCACATCCACCCAAACTTCTCGTTTATTTATTGGTCTGGCCACAGGGAAGTCTGGGTTCTGAATTACAAGAAAGCAACCCCTTGCACGTCAGTTTCAAAGTAGGCCTATCTTATCTGTACCCCAGGGGTATTTACCACTAAAGTTATCGAAGTGAAAGGGTCAAGACGAGTAAAATATGGCAGCTGCGCCAGCTAGAAGAAAACACGGAGCGTGTCTGCTTCGAATCAAAGAAAATTGTCCATTGCGGAAATTTAGGAAAAACAGGTGTTACGATGTTACAGCCACATCTTCGGCTGGTGGTGGGGTGTGTTGGGGAGACTTCAGTAAGCACCCCATTTCTGCATCCAAAACCGGACCTATCAACACCATCTATGTagagcccctccctccctcctatcagTCTATTCACCGTCCCCACCAATCACAGGACCCCATTGCCGTGGATATGGAGGTGGTCCGACCCCAAGCTCCTATTACGGGGGTAATGAGTCTCCCCCCATCCTCTGTACTGGCTCCAGGGCCTCTGGTTCCCAACCTCCAGCCTGCCTACCAGCACAGACGCCTCCCCTCCGCAGCATCCAGTGAGGCCAGCATGGAGCTGGACAGCGGTGTCGACccagagactggagagagagccCAGAGATGACAACACTACTCTTCCGCTGTTTCTATCTGGCCTGATCCTGGAGATCTGGGTCAGATATATTCAGTGTTTCAGATACAATGAGTGTCTAGAACAGGTCAAGTGGTTTGGAACCTGGCTGTACAGACTATCCCAATGTTGTGAAATACTTTTCTCATCCCCTTTACATTGGTAGGTGAACAAGCTTTAAAAAGTATCCATCAGGGAATATGAGGGGACATTGTTTTTATTAGGGTGTATTCAGGCTTCTGGTACACTGCCATATgcttctatacagggctgggaaAGGCACAACTTGAAATGGCATTTAATTGCTCCCTTTTCTCATATTCTGAGCCATTGGCCAGATGAGTCAACAAAGAAGGCTCCCTTCATATAGCTTTGAATGGTCTTCTCAGGTCAGCGTATAGAGACGAAGCCCAGGAATCCATGCACTTGCACGGTCTGTTgacacgtacagtaccagtcaaaagtttggacacacctactaatacAAGGGtattagtattttctacattgtagaatgatagtgaagacaactatgacataacacatcgAATCATGTTGTACCAAaagtgttaacaaatcaaaatatcgtcacccttcgccttgacagctttgcacactggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcacttgctggctgcttttccttcactctgcagtccaactcatcccaaaccatctcaattgggttgaggtcaggtgattttggaggccaggtcatctgatgcagcaccccatcactctccttcttggtcaaatggccATCACAcagctggaggtgtgttgggtcattgtcctgttgaaaaacatgaTAGtcccaaaccagatggaatggcgtatcactgcagtaTGTGGtgataaccagcatggctaagtGGGCCATGAATTTGAAACAATCACtgagtgtcaccagaaaagcacccccacaccacttcttccaagcttcacggtgggaaccacatgcagagagatctgttcacctactctgcgtcacaaagacacggcggttggaaccaaaaatctcaaatttggactcatctgaCCAAAGAACATATTTCCACCTTTCTAATgtacattgctcatgtttcttggcctaagccaGTCTAATTGtcctttagtggtttctttgcagcaattcgaccataaaggcccgattcacagttgatgttcagatgtgtacttgaactctgaagaatttatttgggctgcaatttctgaggctggtaactaatgaacatttcctctgcagaggtaactctgggtcttcctttcctgtgacagtcctaatgagagctagtttcatcatagggcttggtttttgcaactgcacttaaaATGtaccatattgactgaccttcatgtattaaagtaatggactgtcatttctctttgcttatttgagcggttcttgccataatatggatttatGACCACCCCTACCtaatcacaactgattggctcaaacacattgaaacaaattccataaaatgttaaaaataaaacacttaaAGCAAACCTGTTTATTGAAATTCATTCTAGGGGACTACctcatgaggctggttgagagaatgccaagagtgtgcaaagctgtcaaggcaaagggtaacGATATTTTGATGTACTACATGAGTcaatgtgttatgtcatagttgtcttcactattattctacaatgaaataaagaaaaaccctggaatgagtaggtgtccaaacctttaACTTGACAAAAATACAGtcaaacagtaaacaaaaaaaataagtAAACCATGACCTATTGCATGGTTTTATGACTTCCTTAAAGGCATATTCAACAGTCAGGGATGGGAGTTAACACCCAGATAAAAATAGAACCTTTTGACATAACCAGAAGTAATATTTTATCTGTACTCTTCACTCAGTTCTTGTTTTTCAATATGATGTGGTGAATTGCAATGTTTCTTCCCCCATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268681 lncRNA downstream 111662 21632282 ~ 21632789 (-) True G235052
TU268651 lncRNA downstream 153625 21588714 ~ 21590826 (-) True LOC110513449
TU268652 lncRNA downstream 154817 21587450 ~ 21589634 (-) False LOC110513449
TU268653 lncRNA downstream 155879 21587450 ~ 21588572 (-) False LOC110513449
TU268197 lncRNA downstream 243520 21500650 ~ 21500931 (-) True G234623
TU268779 lncRNA upstream 32546 21788047 ~ 21789380 (-) True G235145
TU268801 lncRNA upstream 50029 21805530 ~ 21805751 (-) True G235165
TU268793 lncRNA upstream 127738 21883239 ~ 21919236 (-) True G235157
TU268790 lncRNA upstream 129285 21884786 ~ 21891946 (-) True pmvk
TU268842 lncRNA upstream 132590 21888091 ~ 21889440 (-) True G235200
XM_036964163.1 mRNA downstream 26120 21716853 ~ 21718331 (-) True LOC118944502
XR_002471999.2 mRNA downstream 124790 21612154 ~ 21619661 (-) True LOC110513497
XM_021593285.2 mRNA downstream 135321 21588941 ~ 21609130 (-) False LOC110513449
XM_021593273.2 mRNA downstream 157131 21551418 ~ 21587320 (-) False LOC110513430
XM_021593347.2 mRNA upstream 1156 21756657 ~ 21760649 (-) False LOC110513558
XM_021593341.2 mRNA upstream 1156 21756657 ~ 21760819 (-) False LOC110513558
XM_021593354.2 mRNA upstream 1156 21756657 ~ 21760819 (-) False LOC110513558
XM_036971925.1 mRNA upstream 1156 21756657 ~ 21760819 (-) True LOC110513558
XM_021593461.2 mRNA upstream 129280 21884781 ~ 21887272 (-) False pmvk
TU268723 other downstream 1040 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 245619 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 274506 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 288735 21445488 ~ 21455716 (-) True LOC110513321
TU267728 other downstream 563769 21178597 ~ 21180682 (-) False G234224
TU269608 other upstream 818332 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1401608 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 2016023 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 2425055 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 2425055 24180556 ~ 24183964 (-) True G237657

Expression Profile