RNA id: XM_021593347.2


Basic Information

Item Value
RNA id XM_021593347.2
length 3006
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110513558
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21756657 ~ 21760819 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGTATTTTCCGTTGTGTTTTCTAGCTTTGTTTAACTAGCAGTCTTCTTGCGTGGCGGAAAGCACACCATTTTTATCTAGTGCGCTGGTATGAGAAACTTCCGTGTTTTGATATGGAGTGCGCTTTGAAGGTGAAGAGCTGTTTACCATCAAACCAATAGAGCTGGGACACAAAGAAAGAAACAGACAATGTGATGTGACTTCAGTCAAAGTAAAAACACTCAATCAAGCATAAGACTCACTGACAGATTCACCAAGACAAACGGACTGGAGACATTGAACACCTAAAAATAAAACAATGTCTGAGATCCTGCCGTTAAACCTGGAGCTGCTAGAAGACAGCCCCTCCAAAACCAGCGGGGTGACTGCTGAACCCCAACCCCCAACATGGCGGGAAGAGGAGAAGGTGATTAAAGAATTGGGGGAAGATTTGGAAAAGAGGGGGGAAGGAGTGGTGGAGGAAGATGAAATGGTTAGTTCGGCTAAATTGGAGCCTACCACTCTGCAATGGCCAGGTGACAGGGATGTAGAGAAAACTACAAAGAACAGAAGTGCATTGACTGCAAAAGAAGATaagggaaggggaaagggggatgacCCTGAGGAAGAACGGAAGAGTGTGTACTCCATGTGCACCTCTCTTCAAGAAGGAGAAAGgcagatggagagtgagagagggctgGGTTTGAGAACAGAGGAAgaatggatggggagagaggtgcAGGACCCAGGGCTGTGTAAGATAGGGAAGAAGGTGCaggtagagatagaggtggaAGATGATATGAACTATTTGCCTGAGAAGGCAGCGCAGGTCTTCAACCCATCCGTCACCATCCTACACTCCTCTAGTGCTCCAACGTCTCCCAGCGGAAGGGAGGTATTCTGGGATGTGGACGCAGAGAAGAGCTGCCTCCTCATTCCCCAGGGAACCCCACCTGATGGCTACTACCACGACTGGCCAGTGGAGGGGGGGTCCTCAAAATgtGGTTGTGACTGTGCCAACAGGGATGCTCTCAAAGTGGGGGTGTCTGTGTTCACCGCAGCTCTGATTTTCCCCCTCCTAGTGTGGGGGGGCTATGTCTTCCTGCCTTTTGATGCCCCACTGCTGGACAGTGCCCCCCTAAGGCTGGTCTACACACTGCGCTGCTCTGTCTTCGCTGTGGTGCCCATCATACTGGGCTGGTTGGTGCTGGGTGTCTCCAGGATGCGGTTGGGGGATGTGAAGCCGCTGCGTGAATTGGAGGCCAGGGAAGTGGGTGTGCACCGGCGCTATGTGGATGACTCCGTCACCCTCTTTCTGCTCTACTTCCTGCAGCTGGCTGTAATGGCGCCCTACCTGAGCCAGGACCTGCTCAAACTAGTGCCCCTGCTCACCATCATCTTCGCCTTCGGCAGGCTGATGTACTGGGTGGCAGCTGCACTGGGCAGCAGTGTTCGGGGCTTTGGCTTCGGCCTGTCCTTCCTGCCCACTGTGGCCATGCTGGGTGCCAATCTCTACTTCATCTTCACCATGGATGCTGGGGGCACCATCTTTGCCCAGGATGTGATGCACCAACAAGACCAACCCTCAGCCTCCCGCCAGAGGTTCTGGGGATAGGAGGATGGAGGAAAGGCTGAAGAAATGCAAGGATGGGGAAGAGGGACAGGATCTGTTTTACCAACTGGTAGAATTTAACTTTCAAAGGGTTACTATGTAAACTGTAGTGGATTGTGCTAGTGTGATTTTTAAACCACACTGATGATGTGTAGAATAGACTGAGCAGTGGTAGTTAGTGATAGAGCTTATAAAAACAGTTTTTGGTTAAAGTTTCTATGTTATAATTCATTTTCTTGCATGGCATTATACCGTCACTTTGGTGAAACGGTAGAATGCATTCTGTAAAAGATCTGCTAATCGACAGAATGACTGTTAAGTACCATGGAATAATGTTAAAATCACAATTGTCGGTTCAATGCAGAGTTAATGAAAATAGTTTGTAGTTCCACACAGAATTGTGCCACTTGGGGAAGTGTCTACAATAACCAAACCATTGCCTTCCTCAGAAATATCTAGCTAGGCCTGCTGCAGACAAATAGTTTGCTGAACTGTACTGTTTGGTTTGACAATTATCTGTACTTGAGGCATCCTGTAATCTATTGTTTTGCATTTGGTTGTGAATCTGGTATTGCAGGCTAATAACATTAATTGCATTGACATTTGGTACCTAAAATCAGGTTTATAGAGAGAAACTAAGACTTCCTCTAGACCTTCTAGTCAATCAATTCCTTTTTGAAAATGTTCAATACAACCAAACACAAAATCATGTTCTGTGATAAGGTCATCGACTACTGAGTGGACATTTTGTCTCATAATTTCATTACTGTATTGCCTTTTAAAAGGACGTCCACACATGAGCAATGCCATGTCATTATAAGAGCTAACAAATCATTTAAAGATAATTGATTTAGTACAAAGATTTTGATATTGAGAACCATTTCATTATTGGAGAAGGTGGATTGCATGGCTTTTTGTGCCCCCAAAAATGGCAACCTTGTTATAGAAATCAAACCCGTCCAACAAAAACAAACCTACCTGCACAGGTGGCCCAACCTCCATGCCTTCATCTCTGAAAACAAATCCTTTCACAATACAGCACAGCTCTGTAAGAGTGATTGTGAATGGAGTTATTGTATTTTAAAATAGACCTATTTTAAAATGTAATGTATGAAATCTGATTTTTAGTGTAGGCATAGACTATGAAATGTATAACTACGCTGATTTCTTTCTACGTTTCCAAGTCAACTTTAGCTAATAACAAGCGGAAACAAATTGTAGAGTCTATTTCATGTCTATCATTGTCTTTTCTTATGATTTTCTTTtaactttttatatatttttacaaaTAATTTATATGTAACAAGTTATGTTTTTATTGGGTTTTCATTTGCTTCATTAGTGAAGCTGACACATTTTTATTGGTATGAAAGCCTTTTAGTGGCTAATAAAAATTAGCAAGCATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268681 lncRNA downstream 123868 21632282 ~ 21632789 (-) True G235052
TU268651 lncRNA downstream 165831 21588714 ~ 21590826 (-) True LOC110513449
TU268652 lncRNA downstream 167023 21587450 ~ 21589634 (-) False LOC110513449
TU268653 lncRNA downstream 168085 21587450 ~ 21588572 (-) False LOC110513449
TU268197 lncRNA downstream 255726 21500650 ~ 21500931 (-) True G234623
TU268779 lncRNA upstream 27398 21788047 ~ 21789380 (-) True G235145
TU268801 lncRNA upstream 44881 21805530 ~ 21805751 (-) True G235165
TU268793 lncRNA upstream 122590 21883239 ~ 21919236 (-) True G235157
TU268790 lncRNA upstream 124137 21884786 ~ 21891946 (-) True pmvk
TU268842 lncRNA upstream 127442 21888091 ~ 21889440 (-) True G235200
XM_036971926.1 mRNA downstream 947 21744425 ~ 21755710 (-) False LOC118946878
XM_036964163.1 mRNA downstream 38326 21716853 ~ 21718331 (-) True LOC118944502
XR_002471999.2 mRNA downstream 136996 21612154 ~ 21619661 (-) True LOC110513497
XM_021593285.2 mRNA downstream 147527 21588941 ~ 21609130 (-) False LOC110513449
XM_021593273.2 mRNA downstream 169337 21551418 ~ 21587320 (-) False LOC110513430
XM_021593461.2 mRNA upstream 124132 21884781 ~ 21887272 (-) False pmvk
XM_021593474.2 mRNA upstream 141824 21902473 ~ 21926314 (-) True LOC110513756
LOC110503903 mRNA upstream 176533 21937182 ~ 21949846 (-) True LOC110503903
XM_036964179.1 mRNA upstream 278829 22039478 ~ 22040884 (-) True LOC118944504
XM_036972047.1 mRNA upstream 282740 22043389 ~ 22050828 (-) False LOC110513791
TU268720 other downstream 1156 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 13246 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 257825 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 286712 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 300941 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 813184 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1396460 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 2010875 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 2419907 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 2419907 24180556 ~ 24183964 (-) True G237657

Expression Profile