RNA id: TCONS_00028785


Basic Information

Item Value
RNA id TCONS_00028785
length 2065
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_014554
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 8758336 ~ 8812963 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATAGCCTGCGCCCCGCCCTTCAGATTTTAGTCTCGCACAGCAGCTCAGTGTTTTTTATTTGGCCCTCCTCTTCAGTCTTTCATGACTCGATTCGCCTCCAAACACACCCGGCAAAAGTACGTCTAGACATTTTCAACTCGGACATGTGAAGCGAAAAGTGTCGGGAAAAGTTTATAATCTGGGCTGTGTGGATGAAAACTAAAAGCATACGGTTAAAAGCAGCAGTGAACGAGGCGgaggacaaacaaaaaaaagtggaaGAGTTTTAACGTCATCTCTAACGCCAAACTTCCCTTGGCGTTTTTCATCTGTCACGGGGATTTAAGACAACGATGCAGACGGAAAGGGTTATGGATTATGAAGAACGCACAAAATTGTACAGATTGCCCTGAATAACCGCGAGTTTACACGCACTTTCATGCACCTTTGCTAAACCCATCTCATCTCATCTCGCGCTCACACCCTTGTGCTTCGCACTACTCCTGAAAGATGTTGTCCAGGCTGAGCGAGTGGTTCTGGAACGAGAGGCTGTGGTTTCCTGGAGACCTGGGCTGGGCTGACCTGGAGGATCGGGACGGTGTCACCTATGCCAAAACAGCAGACCTCTGGGTGACCCTGCCCATTGCACTCACCTTCCTCATCATACGACAAGTTTTCGAGAGGACGGTGGCCATTCGTCTGGCCACAGCTCTGGGTGTGAAGGAGAAAGTTCGAGTGCGAGCGGCGCACAACCCTATGCTGGAGGCTTACTTCAGGAGCACAAGTAAAAGCCCCAAACAGGCTGAAGTGGAGAGTTTAGTGAAAAAGACGGGGCACACGGAGAGAGAGATCCACAGATGGTTCCGGCGACGAAGGAACCAAGAGCGACCAAACCAGCTGAAGAAGTTCAGAGAGGCCAGTTGGAGATTTACCTTTTACCTTGTTGCTTTCATTGCTGGCCTTGCTGCACTTATTGATAAACCTTGGTTCTACGATACGAAGGAGATGTGGGCAGGGTTTCCAGTGCTGCCGCTGTTGCCTTCTCAGTACTGGTACTACATGATTGAACTAGGGTTTTACATGTCTCTCCTCTTCAGCGTCGCATCAGACGTCAAGCGAAAAGACTTTAAAGAGCAGATAGTGCACCATGTTGCCACCATCTTGCTGATCAGTTTCTCGTGGTGTGTGAACTACATCAGAGCAGGAACCCTCATTATGCTGGTGCACGACGCCTCCGACTACCTGCTGGAGTCTGCCAAGATGTTCAACTACGCCGGCTGGAGGAAAACCTGCAACTACATATTCATCATCTTCGCTGCCATCTTCATCATCACCAGACTCGTCATCTTCCCTTTTTGGATCCTGCATTGCACCTGGGTGTATCCGGTGACTGTTTATCCTCCGTTTTTTGGGTATTACTTCTTCAACGGGCTGCTGTTTGTGCTGCAGTGTCTGCACATCTTCTGGGCCGTACTCATCCTGCGTATGGCTATCAAATTTTTGCCAGGCAATAATATAGTGGAGGACGAAAGGAGCGACCGAGAAGAAACAGACTCtgaggatgatgatgaggaaGACGAGAAGGACAGGAGAGTGAAAAATGGACCAGTCCTGAACGGCCACTCGCCACTAAACAACAACCATCACCGTAAGACTGAGTGATGAGAGAAGAGGTACAACACTAGCCTTACAGACCAACAGACTCATGCTGACGGatccaaaacacacaaacacgcaccaTTCTAATGCTGTGGAACGGACAAACTTCCAGAAAGAGGATTGGTGTAACCCTTTCCCcacatttaaaacactattaaCAGGCCCCATgtttaaataatgttgttttgttgATGGTTGCCTTGCTTTACTGGTAATATTTCCTCCAGTTTATTCGATCTCAGTTCCTTTATGTTGTTTTGGgcatcgcacacacacacacacacacacactagaaatCATATTTCATTCTTTCTGGTCAGATTTCTCAGAATCCCTCAGTATTTGAGTTCTGACGTTGGCGGAGATTGActggaatttttttttgtgtccaCTTTACAATATAAGAGATTCACTAAGTGACCTTCA

Function

GO:

id name namespace
GO:0046513 ceramide biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016410 N-acyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0050291 sphingosine N-acyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020808-2 Predicted to enable sphingosine N-acyltransferase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including brain; gut; paraxial mesoderm; presumptive rhombomere 5; and solid lens vesicle. Orthologous to human CERS2 (ceramide synthase 2).

Ensembl:

ensembl_id ENSDART00000025385

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030163 lncRNA downstream 6461 8760765 ~ 8768596 (-) False XLOC_014554
TCONS_00030162 lncRNA downstream 6536 8760765 ~ 8768521 (-) False XLOC_014554
TCONS_00030161 lncRNA downstream 12682 8760765 ~ 8762375 (-) False XLOC_014554
TCONS_00028781 lncRNA downstream 72994 8699754 ~ 8702063 (-) True XLOC_014552
TCONS_00030160 lncRNA downstream 111819 8649124 ~ 8663238 (-) True XLOC_014551
TCONS_00028790 lncRNA upstream 4604 8817560 ~ 8824534 (-) True XLOC_014555
TCONS_00028796 lncRNA upstream 170399 8983355 ~ 8985638 (-) True XLOC_014560
TCONS_00028797 lncRNA upstream 217063 9030019 ~ 9036367 (-) True XLOC_014561
TCONS_00030164 lncRNA upstream 363471 9176427 ~ 9186434 (-) True XLOC_014562
TCONS_00028798 lncRNA upstream 419583 9232539 ~ 9234033 (-) True XLOC_014563
TCONS_00028784 mRNA downstream 6493 8760795 ~ 8768564 (-) False XLOC_014554
TCONS_00028782 mRNA downstream 26486 8743260 ~ 8748571 (-) True XLOC_014553
TCONS_00028780 mRNA downstream 43020 8680580 ~ 8732037 (-) False XLOC_014552
TCONS_00028778 mRNA downstream 170628 8582685 ~ 8604429 (-) False XLOC_014549
TCONS_00028779 mRNA downstream 174674 8582918 ~ 8600383 (-) True XLOC_014549
TCONS_00028788 mRNA upstream 3701 8816657 ~ 8880688 (-) False XLOC_014555
TCONS_00028789 mRNA upstream 3709 8816665 ~ 8877469 (-) False XLOC_014555
TCONS_00028792 mRNA upstream 80996 8893952 ~ 8926575 (-) True XLOC_014557
TCONS_00028793 mRNA upstream 115478 8928434 ~ 8940068 (-) True XLOC_014558
TCONS_00028794 mRNA upstream 145178 8958134 ~ 8962884 (-) False XLOC_014559
TCONS_00028774 other downstream 949524 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028762 other downstream 1306741 7468201 ~ 7468316 (-) True XLOC_014531
TCONS_00028751 other downstream 1497464 7276060 ~ 7277593 (-) False XLOC_014526
TCONS_00028719 other downstream 2536068 6232164 ~ 6238989 (-) True XLOC_014509
TCONS_00028709 other downstream 2931852 5843091 ~ 5843205 (-) True XLOC_014503
TCONS_00028791 other upstream 39584 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028818 other upstream 1199542 10012498 ~ 10012614 (-) True XLOC_014580
TCONS_00028819 other upstream 1310277 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028825 other upstream 1425497 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028853 other upstream 1823413 10636369 ~ 10646822 (-) False XLOC_014597

Expression Profile

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