RNA id: XM_021593442.2


Basic Information

Item Value
RNA id XM_021593442.2
length 2787
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110513633
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21857318 ~ 21884768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCGGAAGCGTGCTGTCTGCTGAAATAAGGAAGAGAACGAGGCAACTgagcagtggagggagagagtaacCGTCTTGTTTTGCACAACTTTCCTCCAAATTCTTAGCAATTTGCTTATTCATCTTCAATAGACAACTGGAACCATCACCCATACATTTTGCTTAAAGGGAAAATCCTACTTGTATTCATCTTGTTGGAACTGCCTTTCGAACCTATAGCATTTACTTTAGCCGCTATCTAGCTAACGACGCTGTCTCACTGTGTCCATTGACACATCGAGGTGAAAACTTTGATTTACAATTTTTAGGCTAGTCTATGATTCATTCGCCATAGTTTTCAATCGAACTACTTGACGTTGTTATGCACATTACATTTGTCTGCCGGTAAGAATTAATTTAGACTAAGCTGACAACAGTGTTGAGTAACGTTAGATTGAAAGAAACGAAGCTCTGTTCTAATTTCCAGTTTGGACTCGTTGGCGGGGCGTTGGTTTGTCTGTTCGGGAAAACATCGCATCGGGAACGACGTTTGCCAGCTTGCAACCAATCCAACTGGAACGACTGACGTTAGCATCCTGCACGAGCTAGTTATTAGAAACTCGTTTTCAAATCTTTGCAAGTTAGCTAACAAATTAAGTCGACTGAAGAAAATGGCCAATAGCATCGAGGCAGTGAAGCGAAAAATTAAAGTTTTGCAGCAACAGGCGGATGAAGCCGAGGAAAGAGCTGAGACTTTGCAAAGACAGGTTGAAGAGGAGAAGCGGTCAAGGGAACAGGCTGAGGCTGAGGTGGCCTCTCTGAACAGGCGTATCCAGCTGGTTGAGGAGGAGTTGGACAGGGCCCAGGAGAGACTGGCCACCGCTCTGCAGAAACTGGAGGAAGCAGAGAAAGCTGCAGATGAGAGCGAGAGgGGTATGAAGGTGATTGAGAACAGGGCCTCCAAGGATGAGGAGAAGATGGAGATGCAGGAGATCCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCTGACCGCAAGTATGAGGAGGTGGCTCGTAAGCTGGTGATCATTGAGGGTGATCTGGAGCGTACAGAGGAGAGGGCGGAGCTGGCCGAGGGcAAATGCGCCGAGTTGGAGGAGGAGCTGAAAAATGTCAGCAATAACTTAAAGTCCCTGGAAGCCCAAGCTGAgaagTACTCCCAGAAAGAGGACAAGTATGAGGAGGAGATCAAGATCCTGACCGACAAACTCAAAGAGGCTGAAACCCGTGCTGAGTTTGCTGAGAGATCAGTGGCCAAACTGGAAAAGACCATTGATGACCTGGAAGATGCGCTAGCCAACGCCAAGGAGGAGAATGTCAACATCCACGCCACCCTGGACAAGACCCTGGAGGACCTCAACAGCTTCTGAGTGGCTACTGGCCCCTCCACCACCTCTTACTGCTCCACCCCCTCACCTCtggccctgtctctctgtctgtgctggCTGACTGTTTAGCGTGGGGGGGGATGTTCATTGTTTTTGGTGAAGGTAGCACTTTCTTCAGTCCACACCTAGCCAAATGTTTCTCCCCAGTAGACCAAAATGGCTGACCGCCCCTCCCACATTCCACCCCAGTATCTGCGGATGCTCTCTGgatgagcacccccccccccttattttTTTTATAGCCTCTTCATAGCTTTCTTTTAGTCTTAAAAGGGCAACATTTACTCAAGCACCCACATCTTAAGTGTCTCACAGGTTTCTAATATTCACATTCCAGCTTAGGTGTGTTTTGAGGCCATTCCTATGATCTTTctttggctgctagctgttttaGCCGTAAGCGTTTTAAATACATCGAggcttttctctctttctgataACCCTTGTTACGGGGATATTTGGTGTCCACTGGGACACATATGAAGGTGGCGAGGGTAATAACTCTTACCTAATTATTTCTCCCTTTTGGAATGGGACCACCATTTTGATCATAAACTCTCCCTCTGTTATCCCCATCAACCACTTGCCCTACCAACATATCGCCTCAAACTCTTGTCCCCCTCTAACCACTCACCTTCTGCTGGAACATCCTTACACAAGCACTGCTTTTCTACTGTGCCAATGCCCAGAGGGTCCACAACTGTGCTACCTTTTGTCAAGTATTTTGTGTTAATTTACAAGTAAGGGCTGGGGGGGGTGACATGTTTATTTCTTAAAAGGGAGAAGTGTTTTGTTTAGTTGCATgacatttgtatttttgtttttatcTGGAGTCATTTTCCAAAAAAGGGCCAATGTCACAAGTTACTGTAAactgaatgttttttttccccccagttAACTTCCCCCTTCAAGATCAGGAAATGTAATTGTGAATGAGTTGTAGGTCATTGAAGGGATATAAATGTTGTATAGCTTCAGACAGAATTGAATGCAGATATTCTAGCCAATTGCAGCTGTAGACCTCTAAACTAATTGTTATTTTTCCCAATAAGATGTGGGGGAGGGGAGTGATCAGCCAATCACTACGCATTCCACTGCCAAAATGGAAGCATAGGGGCCAATGAATAGGGAGAAGGGACACAAGGGTATTATCTAAACTTATCAGTATAGGCAACTTTTTTTTCTGCAAATGAAGTGAACTGCAAACCTTATAAaatgtaaagaaataaaaagTAAAATATTGCATCAAGTTTAACTGGAAATTCACTCGACGCCAAGGGTGTAAACATTGTGTTATCAGTAATGTTTTCATTGTAATAATTATGACACACAAATGGacaccatttaaaaaataaagaaccaCGATTTGTATTGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268390 lncRNA upstream 59330 21803883 ~ 21804116 (+) True G234799
TU268365 lncRNA upstream 102108 21761137 ~ 21761338 (+) True G234775
TU268254 lncRNA upstream 275644 21587443 ~ 21587802 (+) True G234677
TU268229 lncRNA upstream 308905 21551421 ~ 21554541 (+) True G234654
TU268038 lncRNA upstream 361533 21501342 ~ 21501913 (+) True G234500
TU268414 lncRNA downstream 15514 21900282 ~ 21900839 (+) True G234822
TU268416 lncRNA downstream 17724 21902492 ~ 21906182 (+) True G234823
TU268427 lncRNA downstream 43131 21927899 ~ 21928166 (+) True G234834
TU268436 lncRNA downstream 56295 21941063 ~ 21941718 (+) True G234843
TU268437 lncRNA downstream 57119 21941887 ~ 21942100 (+) True G234844
XM_021593387.2 mRNA upstream 8291 21846132 ~ 21855155 (+) True LOC110513614
XM_036971927.1 mRNA upstream 17858 21790333 ~ 21845588 (+) False arhgef2
LOC110513748 mRNA downstream 4245 21889013 ~ 21893991 (+) True LOC110513748
XR_005039841.1 mRNA downstream 126162 22010930 ~ 22012458 (+) False LOC118944503
XM_021593480.2 mRNA downstream 132811 22017579 ~ 22037490 (+) False kiaa0319
XM_021593489.2 mRNA downstream 132811 22017579 ~ 22037490 (+) False kiaa0319
XM_021593485.2 mRNA downstream 133230 22017998 ~ 22037490 (+) False kiaa0319
TU267870 other upstream 576444 21286726 ~ 21287002 (+) True G234340
TU267841 other upstream 598940 21264075 ~ 21264506 (+) True G234322
TU266973 other upstream 1254721 20608293 ~ 20608725 (+) True G233545
TU266948 other upstream 1297734 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 2018794 19827130 ~ 19844652 (+) True LOC110512505
TU268500 other downstream 132826 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 173774 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 173911 22058679 ~ 22068080 (+) False LOC110503910
TU269077 other downstream 419725 22304493 ~ 22304906 (+) True G235426
TU269168 other downstream 575772 22460540 ~ 22472917 (+) False LOC110514034

Expression Profile