RNA id: XM_021593474.2


Basic Information

Item Value
RNA id XM_021593474.2
length 1886
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110513756
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21902473 ~ 21926314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCTGCTGAGCACGCTCTATTCCTGCGGCGGGAAGAGAGGAGGTGATTTGCGCGTTTGGCTAGTTTCCCAACGTCGGGGACGGAGGTGCGACAGTTAAAGATTAGCGTGATAGTGCTTCCTTTAAATACCGGGCACCGACTGATCAAAGCGTCCAATTCATTGCAGATCCTCGGTCAGTGCAGCTATCTGGTACGCGCTCCCGTCCCCAAACCTAACCCGAGATGGCAAACGCGTACCTGCAAGGAGTAGAGATCTCTGCATCACAGTTCCTGGATATTTTTCACCATTATGATAACGATGGTAATGGATATATTGAAGGGAAGGAGTTGCAGAGTTTTATAAAAGAACTTCAGCAAGCTCGAAAACAGGCAGGACTTGAGCTTACAGACCAAATGAAGGCTTTTGTACAGGAATATGAGAAAAATACAGATGCCAAAATTGGAATTGTTGAGCTAGTACAAATATTGCCCACAGAAGAGAACTTCTTGTTATTTTTCCGGCAACAGTTGAAGTCTTGTGCAGAATTTATGCAGGCTTGGCGATGTTATGATGCAGACCATAGTGGCTACATTGAAGCAGATGAGCTGAAGAACTTTTTGAAAGATCTGCTTCAGAAGGCTAAGAAACCATATGACGAAAAGAAGTTAGACGAGTATACACATACCACACTCAAAATATTCGACTCAAACCACGATGGGAAGTTGTGTTTGGCAGAAATGGCGAGgCTGCTACCGGACGAGGAGAACTTTCTACTCAAGTTTCAGAATGTGAAGATGGTGAGGAGAGAGTTCAACAAGATCTTTGAGTTATACGATCAGgatGAGAATGGTTATATGGATGAGAATGAGCTGGATGCCCTCCTCAAAGATTTGTGTGAGAAGAACAAGAAGGTGCTGGAAGTCAACAAAATCCCCACATATAAGACCGCCATTATGGCGCTATCAGACGGGGGCAAGCTATACAGGACAGAGCTAGCTCTTGTGCTCTGTGCTGAGGACATTTCAGCCCCTGCCCCCTTATAAACCACTCCTCTTTCCACCTAACCACACCCCCTCCATCCCCTTCTAACCCGCCGCCCTTCCCCTCACTCATGAATTGTGTAAAGATACTGTCGCTTGAAACTCCAAGGATGTAgggtgttttttttgtttcagtttttgcttttctttcaataaATCTGTCAATTTgccagtgacagtgtgtgtgtagctaGGGCACATTATCAGAGACATAGGGTGTCACATACTTTTCAAATCTTTTGTTTCTATACTCTTTGTAAATGTACAGATTTTTGTAACAATGAGATTGATACCACCATTGAAAGTCCCTGTACTTTGTCCTCTCTATACTACATACTCCAGGACTGTAGCCTCTCATTGGCTGAAAGAGAGGGTGTGTCCCCTACTGACCAATGACAACAATGTTTACCGTATTGTTAATTAATATCTCTACACCAAGTAGTCAAACTACTAGTAACAATAACTTATACTATTAGAATTATATCCCTCCATTAGCCTAAGCAATATGTTACTAAAATGTTTCTGTAATGTTGTGCATGGAAACTAAATATAATATATAGCGGAAGAACAGTTCTGTGATGTGAGACAATTTTAAGCTATATATCGTTTTGCAGTGCATGTTAGTTACTGAAGGCTAGCCTTGTGTGGAGGTACTACTGAATGGACAAGCACATATCTCGGAGTTGTGTAGCCTAACCCCTCGTGACCCCTGACCTGCCCTGTGTATAACGATGGTGCCAGTCTCTGATGTGCTACATGGACCTTTTTTTGCACTGTTAACAATGCCATGCCCCACCATGCTGGGCACCAGAAACACTGTGTAAGATGTAATAAAACTCAATTCAACAAATACCTTACACCCCAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K14757 CALB1, CALB; calbindin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268790 lncRNA downstream 10527 21884786 ~ 21891946 (-) True pmvk
TU268842 lncRNA downstream 13033 21888091 ~ 21889440 (-) True G235200
TU268801 lncRNA downstream 96722 21805530 ~ 21805751 (-) True G235165
TU268779 lncRNA downstream 113093 21788047 ~ 21789380 (-) True G235145
TU268681 lncRNA downstream 269684 21632282 ~ 21632789 (-) True G235052
TU268871 lncRNA upstream 16790 21943104 ~ 21943891 (-) True G235229
TU268877 lncRNA upstream 25463 21951777 ~ 21952115 (-) True G235235
TU268878 lncRNA upstream 25920 21952234 ~ 21952452 (-) True G235236
TU268916 lncRNA upstream 80591 22006905 ~ 22007104 (-) True G235274
TU268918 lncRNA upstream 83404 22009718 ~ 22010013 (-) True G235276
XM_021593461.2 mRNA downstream 15201 21884781 ~ 21887272 (-) False pmvk
XM_021593341.2 mRNA downstream 141654 21756657 ~ 21760819 (-) False LOC110513558
XM_021593354.2 mRNA downstream 141654 21756657 ~ 21760819 (-) False LOC110513558
XM_036971925.1 mRNA downstream 141654 21756657 ~ 21760819 (-) True LOC110513558
XM_021593347.2 mRNA downstream 141824 21756657 ~ 21760649 (-) False LOC110513558
LOC110503903 mRNA upstream 10868 21937182 ~ 21949846 (-) True LOC110503903
XM_036964179.1 mRNA upstream 113164 22039478 ~ 22040884 (-) True LOC118944504
XM_036972047.1 mRNA upstream 117075 22043389 ~ 22050828 (-) False LOC110513791
XM_036972056.1 mRNA upstream 117075 22043389 ~ 22050828 (-) False LOC110513791
XM_036972066.1 mRNA upstream 117075 22043389 ~ 22050828 (-) False LOC110513791
TU268720 other downstream 146972 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 159062 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 403641 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 432528 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 446757 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 647519 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1230795 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1845210 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 2254242 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 2254242 24180556 ~ 24183964 (-) True G237657

Expression Profile