RNA id: XR_005039841.1



Basic Information


Item Value
RNA id XR_005039841.1
length 1133
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC118944503
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22010898 ~ 22012458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tatatatacacatacacacacatgtacagtacatatacataaACATATTCACAGGACACTCAACTTATCTCTTATGTTTTTCCCCACATCAGATATGCAGGTGACATTTCCACCTGGATGACAGCACATAATCAGCAAGACGGAGATGCTCTTCATCCGAGGGAATGCCTGCCCATTCACAGATGTTAGATGATCACATGTCATTTACATTCCAGCCCTTATCAGCTCCAGATTTGACTACTTCAACTCACACCCTGCTGGAATCCCTGCATTCTCAGATTCCCCTATGTTATTAATCTCTATATTGTAATCAATAAAGTGTTTCAAAATGCTGTACTTTTATTAACATATAATGTTCAGATCATTcctgagagagaaggggtgtaatatCTCCTGATGGGCGTGTGGTACTCTTTCTCACCCATGCCAACAAGATGTTACTTCTTGTGGGGTCTTTGCCTTGAAAGTAAGTATGAGAGTATAAGTAATGTACAATTAACCTACTGAAAGTATACTGACTAAAAGGCAAAACAGAGCTGTCAAATTATATTATAGCTGTGTCATTGTATCCTTCCAAATTATAATCTTAGGTGTAACATAATTTTGTTGGGGAAAACTGAAATGCCCATCAAACTTTTTTCCCCAGTTTGCTGAATTTGTTCTGAAAGAGGAGTCGATTGTCTTTTCAAATACGGACAAAGATTTTAACATCATGAGAGAAGAAATAGCAGTCACTCTCCTCCAAAACACTGATGACCTGAGCCAACTGTGCCACTTCTGTGGGGAGGTGGACAATAATGAGGAAGACACTATCTGGATTGGTTGTGACCGCTGCCCACGATGGTTCCACCAGACCTGTATGAAAACCATCCTATCATGGAGGATTATGTCTGCGCTGCCTGTCAGGACTAGGTTAGGCTTGAGTTCCAGGCGACGGTATCACCtggaaaactttccataaaaagtgGAATAAATGTTCAGTCGAGCTGTTGTAGCTTTCCAATATTTTTTATGTTATTTATTGTCTTTTTATATTTGATTTACTGTCATTTTATATTTAATTATGCAAATATCCAAATTAGAGGtagaccgattaatcggcatggccgatttcaaggtttcataacaatcgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268448 lncRNA upstream 57617 21952571 ~ 21953313 (+) True G234855
TU268440 lncRNA upstream 66537 21944146 ~ 21944393 (+) True G234847
TU268437 lncRNA upstream 68830 21941887 ~ 21942100 (+) True G234844
TU268436 lncRNA upstream 69212 21941063 ~ 21941718 (+) True G234843
TU268427 lncRNA upstream 82764 21927899 ~ 21928166 (+) True G234834
TU268504 lncRNA downstream 197 22012655 ~ 22012897 (+) True G234902
TU268506 lncRNA downstream 2658 22015116 ~ 22015435 (+) True G234904
TU268550 lncRNA downstream 46221 22058679 ~ 22067477 (+) True LOC110503910
TU268593 lncRNA downstream 119386 22131844 ~ 22132078 (+) True G234970
TU269043 lncRNA downstream 225482 22237940 ~ 22238284 (+) True G235396
LOC110513748 mRNA upstream 116939 21889013 ~ 21893991 (+) True LOC110513748
XM_021593403.2 mRNA upstream 126162 21863441 ~ 21884768 (+) False LOC110513633
XM_021593480.2 mRNA downstream 5121 22017579 ~ 22037490 (+) False kiaa0319
XM_021593489.2 mRNA downstream 5121 22017579 ~ 22037490 (+) False kiaa0319
XM_021593485.2 mRNA downstream 5540 22017998 ~ 22037490 (+) False kiaa0319
XM_036972102.1 mRNA downstream 39077 22051535 ~ 22057256 (+) True LOC118947026
XM_021582547.2 mRNA downstream 45026 22057484 ~ 22067868 (+) False LOC110503910
TU267870 other upstream 723928 21286726 ~ 21287002 (+) True G234340
TU267841 other upstream 746424 21264075 ~ 21264506 (+) True G234322
TU266973 other upstream 1402205 20608293 ~ 20608725 (+) True G233545
TU266948 other upstream 1445218 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 2166278 19827130 ~ 19844652 (+) True LOC110512505
TU268500 other downstream 5136 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 46084 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 46221 22058679 ~ 22068080 (+) False LOC110503910
TU269077 other downstream 292035 22304493 ~ 22304906 (+) True G235426
TU269168 other downstream 448082 22460540 ~ 22472917 (+) False LOC110514034

Expression Profile