RNA id: XM_036964179.1


Basic Information

Item Value
RNA id XM_036964179.1
length 903
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC118944504
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22039478 ~ 22040884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatattgatcGGGCCTTATTTCTTAAATGTATCATTGGTAAATTGTGGCTGTCTGATTATTAATAACGAGTcattatttatgatgcaaggtgatttgtagatcattAGTCGTCAGTCTGCTGAAATGTCGAACAAGCCCATTGGGTAGCTGATGCAATGTGATTTATAGATTAGTCAGCTTCGCCTTTAAAGTCGACTTGAGACTGAAAGGACCGAACTTTGACAGATGTAAGACTACTAATGATGCAATGCACACATGCCTACATTTCAGGGAAGCTGGTTATAGTTTGCTGGCTCTTATTGGACGCAAGAGAAGATATCCAAGCGCGTGGATTGGCCAGCTAAACATCAATGGCGATGGGAAAGACAGACGATACATGTGTCTGCTCCAACCGCTTCCTGGTCCAGAGTAGGTTCCACGATCACTTCATAGAGAAGTTGGGGAAAGCCATGGACGCAGAGCTCCGTCTGGGCCACGGCTCTGACCCAAACACCACCCAGGGACCCCTCATCAATGTCCGTGCCTCTGAGAAGGTGGAGCACCAGGTAATGGATGCAGTGTCTCGGGGGGCCAAGGtgctaaggggggggggggggggaagcgtCTGGATGGCTCGTTCCATCAGCCCACTCTGCTGGCTGATGTCACCACAGACATGCTGTGTACCAGAGAGGAAACCTTcggtcctctcctccctgtcatcAGGTTTAACGCAGGGAAGGAAGCACTTGCCATTGCCAATGCATCTCATGTGGGTTTAGCAGGTGAGCTAAACAGTATTGTATGCACCTTGCTGTCATGTCTGAAAATCCCTCAaaccttccaaatggacattgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacgaagtcaaggtattggagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268925 lncRNA downstream 22164 22016919 ~ 22017314 (-) True G235283
TU268921 lncRNA downstream 25914 22013257 ~ 22013564 (-) True G235279
TU268920 lncRNA downstream 26308 22012937 ~ 22013170 (-) True G235278
TU268918 lncRNA downstream 29465 22009718 ~ 22010013 (-) True G235276
TU268916 lncRNA downstream 32374 22006905 ~ 22007104 (-) True G235274
TU268955 lncRNA upstream 51430 22092314 ~ 22095038 (-) True G235312
TU269458 lncRNA upstream 200140 22241024 ~ 22241932 (-) True G235750
TU269502 lncRNA upstream 242996 22283880 ~ 22284776 (-) True G235785
TU269516 lncRNA upstream 278042 22318926 ~ 22319165 (-) True G235793
TU269517 lncRNA upstream 278471 22319355 ~ 22319576 (-) True G235794
LOC110503903 mRNA downstream 89632 21937182 ~ 21949846 (-) True LOC110503903
XM_021593474.2 mRNA downstream 113164 21902473 ~ 21926314 (-) True LOC110513756
XM_021593461.2 mRNA downstream 152206 21884781 ~ 21887272 (-) False pmvk
XM_021593341.2 mRNA downstream 278659 21756657 ~ 21760819 (-) False LOC110513558
XM_036972047.1 mRNA upstream 2505 22043389 ~ 22050828 (-) False LOC110513791
XM_036972056.1 mRNA upstream 2505 22043389 ~ 22050828 (-) False LOC110513791
XM_036972066.1 mRNA upstream 2505 22043389 ~ 22050828 (-) False LOC110513791
XM_021593512.2 mRNA upstream 2505 22043389 ~ 22051257 (-) False LOC110513791
XM_021593504.2 mRNA upstream 2505 22043389 ~ 22051288 (-) False LOC110513791
TU268720 other downstream 283977 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 296067 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 540646 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 569533 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 583762 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 532949 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1116225 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1730640 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 2139672 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 2139672 24180556 ~ 24183964 (-) True G237657

Expression Profile