RNA id: XM_021593499.2


Basic Information

Item Value
RNA id XM_021593499.2
length 2559
RNA type mRNA
GC content 0.42
exon number 12
gene id LOC110513791
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22043389 ~ 22051474 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTAGTCCTAATTGGCTAATTTCTAATATTGTGTGGTTTAGTTAGTCATGATTGACTAATGTTGTGTTGTACGTCATCTAAATGATTGCCCATTGACGCCCACACTGCAACAACCCCGCCATTTGGAAGCTAATCCAATTCTGTTTTGGTGACAAGGGCAGCAGATGTTACAAAGTGCACTGACATGACTGAAACAATGGATGAAAAGATGGAGGTTTGTCCCCTGTCGGATGAGATGGAGAAAGAACAAAAGATTGAAGACCTGGCTGACTCACCATATAAGGCCCTGAAACCACGGAATGAAATGAGTAGAGACATAACTCTATCTCAAATAGTTGAagggaagagggagaaaaagacGGTGCAAAGACTTGATTTCCAGGTTGCAAAACCTGCGAAGGTGCTGAAAGTTGAAAATGGTGGCGGAGATAAATTAGGAGACATTGCGAGAGTGAACCACCACCTTGGAAAGCTGAAGGTTCCAGATCTGAAACCGCTTCATACAATTCTCTTTGATATGCCAGGTAAGATTGCCACAATGAGGAAAAACATGCGGCTGTTCAATGGCTTCCCGTTCGAGGTTGACAGTGATCCCTATATAaagaagaaggagaggatgatgagGATAACATGTGTAAGGTTGAGGACCATCTGTAAAGTGTTGGACCTGGAGAAGGGTGGAAACCAGTCAGTCCTCATCGATAGGATCATGACTTTCCTCATTAGTCCCAGAATATCAGGAAAGCCTGTGATCTCAAAGAGAAAGAAGAAGTCGAAGAAGAATATCTCAACCAAAGACTCTAAGAGCAAGACCAAGGCTAAGGCCAGGAGTACATCCAGCAGCCCCCGGAAGGTCAAAGCAGAGAGCAAGTCCAAAGCTATCGTCACTGATTCTAGCAGTGATGAGGATGACGAGCAAGGAGTCACAGTCGAACAAGACGAGTCGGACGCTGAAAAGAAGAGCTGGAAATCGGGAAAGAGGGAAAAGGTGACGACCGATGAAGATACCGATGATTCTGAAGACGATGAGGATCCCAAGTCAAATCCACCAACCAAGGGCAAGAGAACACCTTCCAGGAAGCGTACGCAACCGGCAAAGAAGGCAGCTCCTGCCAAAAAGAGAACAAAAGTGGAAGACTCCGACCTGTCTGAGTCTGATTCGGACAAGGATGATTCAGACAAGGATGATGAGGATGAGAAAGACAGCGAGAGTGAAGTTGAGAAGCCAAAAAGGAAACCGGCAGCTAAGAGGGCAGCACCGGCCAAGCCAGCAGCTAAGACCAAGAAAGCAGACAGCAGcagtaacaaacagaaaaagACTGCCAGCAAGGGCAATGCAGCACTCGACAGCTCGGACGACGATGAGCCGTTGATCAAGATGATCAAGAAGCCTCCGACAGATGAGCAGCTGAAGGAGACGGTGAAGAGGCTGCTGAAAGACGCCAACCTGGAGGAGATGACCATGAAGAAGATCTGCCAGAAGGTGTATGACACATACCCAGACTATGACCTGACCAGCAGAAAGGACTATGTCAAGCAGACAGTAAAAACGCTGATTTCCTAAAGGACATGAAAACGGTCCTTGTGACAAATAACTGTGTGAACGTTCCAATGCTGGAAAAGGATAATCAAAAGAATGTGCCTACCTTAGAGCTGCTCAAAGCAGAGTTTTACTTCATGTTTTTATTTGAATCcaaatgtttttgtttctgtattatgtcatttccAACTTGACTGCACACTTCTCTTAGGTCATATTTAACATGCTACTTAAGGCTTATGCATTTGAGTCATTGCTTGTTAATAATCTGTGCTTTGTTAATACACTTTACAGTTTTTCTACTGATCCCAAGCAAAGGGTATTTAGGCTAAACGAACCGCGTTTAGAGATTCAAGGTTGGTCACTGTAAATGGAAACATGTCCTCAGGCAATGCATGAATTCACACATggttgattttaaatgtatttcttgACTTGACCAGTCAAAATAGAAAAAGGCCCCTCACCATAGCTATCCACTGCCTTTGTCTTCTGTGGAGGATTTCAAATCTTTCCCTCTGTGGTTTTGATGCACATATAACAGCTTTATTGCAACAAGGcagtggtatgtatgtatgtatgctggggtgtattcactagaaccaaacggggagggacctacaGGAATTTGAACAATAAACTTTCTGTTTTTAGTAAAcggtttctgttgcaaaacattttggactAATGATGGATTTGCATGGCAAGCTGTTCAATTGAGTTTTGAAAAGTATTGTCACGGTCAAGTCTTCAAACATAATCCTTGATTGCATTTATAAGACTTCATGTTTTTATATGTAAATGTGTACATTTGTGAATCATTTACTTTTTATGAGCTCCTGTTTTAGTCCTTATTTTGTCTCTGTATGCAGTACAGGATGATCTATGTAGTTGTTACTTTGCTCAATGAAgagtttgattttttttttttgtcaatataCCTTTGACAAAGTAAGTGTCATTGAATGAAATTGTCTTCCAATGTTATGCATATATATTAAATCAGATTTTTGAATGAA

Function

GO: NA

KEGG:

id description
K17046 DEK; protein DEK

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268925 lncRNA downstream 26075 22016919 ~ 22017314 (-) True G235283
TU268921 lncRNA downstream 29825 22013257 ~ 22013564 (-) True G235279
TU268920 lncRNA downstream 30219 22012937 ~ 22013170 (-) True G235278
TU268918 lncRNA downstream 33376 22009718 ~ 22010013 (-) True G235276
TU268916 lncRNA downstream 36285 22006905 ~ 22007104 (-) True G235274
TU268955 lncRNA upstream 40840 22092314 ~ 22095038 (-) True G235312
TU269458 lncRNA upstream 189550 22241024 ~ 22241932 (-) True G235750
TU269502 lncRNA upstream 232406 22283880 ~ 22284776 (-) True G235785
TU269516 lncRNA upstream 267452 22318926 ~ 22319165 (-) True G235793
TU269517 lncRNA upstream 267881 22319355 ~ 22319576 (-) True G235794
XM_036964179.1 mRNA downstream 2505 22039478 ~ 22040884 (-) True LOC118944504
LOC110503903 mRNA downstream 93543 21937182 ~ 21949846 (-) True LOC110503903
XM_021593474.2 mRNA downstream 117075 21902473 ~ 21926314 (-) True LOC110513756
XM_021593461.2 mRNA downstream 156117 21884781 ~ 21887272 (-) False pmvk
XM_036971925.1 mRNA downstream 282570 21756657 ~ 21760819 (-) True LOC110513558
XM_021593527.2 mRNA upstream 38382 22089856 ~ 22091328 (-) True LOC110513818
XM_021593534.2 mRNA upstream 243393 22294867 ~ 22302014 (-) True LOC110513832
XM_021593542.2 mRNA upstream 254465 22305939 ~ 22317525 (-) False LOC110513844
XM_021593544.2 mRNA upstream 254465 22305939 ~ 22317525 (-) False LOC110513844
XM_021593541.2 mRNA upstream 254465 22305939 ~ 22317533 (-) True LOC110513844
TU268720 other downstream 287888 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 299978 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 544557 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 573444 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 587673 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 522359 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1105635 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1720050 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 2129082 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 2129082 24180556 ~ 24183964 (-) True G237657

Expression Profile