RNA id: XM_021593527.2


Basic Information

Item Value
RNA id XM_021593527.2
length 1473
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC110513818
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22089856 ~ 22091328 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCTTACTTGCATTTCTGCCAAGCAACGTGGTGAGAGGAAGGAACTGAGCTACGCTCCCATTCATTTCGAAACTACAGCCAAGAAACACACAAAATACAACAAAATGCCTTGTCGAAAGGAGAACTATATCCTCTTGGAGCAGTCTGTTACCGTCGATTCAAAAGAAGTGGACGCTTTGGTCACGAAAATCGGTGAGGCGCTGCAGCTTCACAACAATAGTGCTAATCAAAAGACGATGTCATGTCTCCACGGTCTCACCAGCAACTGCAACAGTAGCAACATCAAACAagctaacaacaacaacaatggtgTGGCCCTGCAAAAACGTACCGGGTGCTGTATACGGCTTCGAAACCGGAGGCAACGTAGTAACAGAGCTAGTCCGTACAGCTTCCCTGGCTCAAGTAACCAGGAGTGGGACCATTTCAAACGTTGGGACCGAAAGGGGATCAACGCAGCTGTCGAGGATGACCCACATCAGTTACTTCAGGAATTAATTTTGTCTGGGAATCTAATCAAAGAAGCGGTCAGGCGGCTGCAGTTCTCTACGACGGAGTGTGGAGATCTTTCGGACAAGCTGCAGTGCTGATGATGCGGACAATATATTCATTAATGATATGTTACCGACAACGTAAACTATTTTGctgacatagctagctagctataacgTTAGTCTACATGTTGAACGATTAAATGTCATGTTGGTAACGTCGTTAGCATGTCTACTTTGTGACCGTTAATTTAGGTTTTTAATTTAGCCAatgcgttagctagctagttaacgttaaccATGTTTGTTTGCAACTCCAACTTGATGGTTAGTTAGATTTTTGTTTATGGGTGGGGACTCTCCTTTTCACACTTCGTTGGCTTTTAGTTAGTAGCTAGTTATGTAAACCAAGTGAATGCTATGTCAACCAAGTGAAAGCTTTACGTTGACATTGTTTACAAATCTAATCTCAGGCCGCCAGCATTGCCTGTTTTGGTCCGTTAGTTTGAATCGGGTCGTTTCAAATCAAAGGTCTTACGTTACTAGTTAGCAAGCTAGGCTAGCGCCACACTCATGTCAGGGTGGATTCCTAACCCCCAGCAAGGCAGCACTGTGACTGCTCCGATAGCAGCTTTGTATTTCCTGTACGCAGAAGGAACGGGATCGACAACCAGCTACCAAACCGTGTAGGAGACGGGCGACATTTCAAATGGTTCTGACTAAATGTCTCTTCGACTGGCTGGGGGcggtgtattttttattttttttaaattttttctTCATAATGGGATGCGGATGTTTCATTTTCCCATTGTCTGTGTCAAGTGATTTACCATGACCACTTCGCAACGAAGTATTTTATAATGTTCCTGAGTATTCAGGCCTTTGTCTTAAATAAACAGTGTttttattttgtgtgtatgtgtatgctttTCGCCATCAGATAAAGGTTCCAATAAAATATAGCAAGTAACTACAGTA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K03096 FRAT2; frequently rearranged in advanced T-cell lymphomas 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268925 lncRNA downstream 72542 22016919 ~ 22017314 (-) True G235283
TU268921 lncRNA downstream 76292 22013257 ~ 22013564 (-) True G235279
TU268920 lncRNA downstream 76686 22012937 ~ 22013170 (-) True G235278
TU268918 lncRNA downstream 79843 22009718 ~ 22010013 (-) True G235276
TU268916 lncRNA downstream 82752 22006905 ~ 22007104 (-) True G235274
TU268955 lncRNA upstream 986 22092314 ~ 22095038 (-) True G235312
TU269458 lncRNA upstream 149696 22241024 ~ 22241932 (-) True G235750
TU269502 lncRNA upstream 192552 22283880 ~ 22284776 (-) True G235785
TU269516 lncRNA upstream 227598 22318926 ~ 22319165 (-) True G235793
TU269517 lncRNA upstream 228027 22319355 ~ 22319576 (-) True G235794
XM_021593499.2 mRNA downstream 38382 22043389 ~ 22051474 (-) True LOC110513791
XM_021593504.2 mRNA downstream 38568 22043389 ~ 22051288 (-) False LOC110513791
XM_021593512.2 mRNA downstream 38599 22043389 ~ 22051257 (-) False LOC110513791
XM_036972047.1 mRNA downstream 39028 22043389 ~ 22050828 (-) False LOC110513791
XM_036972056.1 mRNA downstream 39028 22043389 ~ 22050828 (-) False LOC110513791
XM_021593534.2 mRNA upstream 203539 22294867 ~ 22302014 (-) True LOC110513832
XM_021593542.2 mRNA upstream 214611 22305939 ~ 22317525 (-) False LOC110513844
XM_021593544.2 mRNA upstream 214611 22305939 ~ 22317525 (-) False LOC110513844
XM_021593541.2 mRNA upstream 214611 22305939 ~ 22317533 (-) True LOC110513844
XM_021593560.2 mRNA upstream 233394 22324722 ~ 22336054 (-) False LOC110513910
TU268720 other downstream 334355 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 346445 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 591024 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 619911 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 634140 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 482505 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1065781 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1680196 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 2089228 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 2089228 24180556 ~ 24183964 (-) True G237657

Expression Profile