RNA id: XM_021593541.2


Basic Information

Item Value
RNA id XM_021593541.2
length 3962
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110513844
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22305939 ~ 22317533 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCGGATCAGCTGTTAGTGTGCCTCAACAATAACAAAGGGAACAGTTGGGACCTCGGAAAGGCTCGGACAAAGTAACGAACTGTGTTGCTCCGAATACAAAGGTCCATGTACTTAATTTCTTCTGCGAAGGaaacttttttatatatattttctaaaAGATACAATCTACCTCAAAGTCTTAAGGATTTAATCACTAAATATCAGTCCTTTGCTGTTCACATCTTTTCTTGCCGCAGGTGTCGACGACAGGCCTCCAACCAACCATCCAAACACCATACGACAAGAAAgtcctttgTAATTTTTGCACACGTCGAGGTGAGCTATGACCAGACTTTGCACGGCTCCCCTCAGATGATAGACATCCGTACCTTATTGAAGCACTTTAGCACCTGCAGCTGATGACCAAAGTGCCTGTTCCCCACCCTCACCCCGGTCCTCGCACCACTCAGCCCCCCCTTGGTCCTGCCGCACCCCCCCAAGGAGTCCCAGTATGTTCCAGAGGCTCACCAGCGTCCTGTTTGGGGACGATGTGGAGGAGGTGAGTGGGGGAGGCCCTGGAGAACAGGGCTTTGGCCagaaggaggaggatgaagagtgGATCCTGGTGGACTATCTGGCCGAGGCCTGCTCCAGCCCCTGTGGTGATGGcctgtctgaggtggaactgACTTCGGAGGAGGAAGGGGACCTTGTGGTCGTCCCCTCTCCCATCGCCAGCTCCCCCATCCGCTATGCCTCCTGCACCTCCCTGGACTCCACCGCCGACACCGAGGATGGGGGTcccgaggaggaagaggggggtttCCAGCGCCTGGAGGCCTGTTCTCTAGAGGAGAGCTGGTTCGTTACTCCCCCACCCTGCTTCGGCGGGGGGAGGAGGGGCAAGCCTATGGTACTGGAGACCAGCCCCCTGGAGAACCTGCTGATAGAACACCCCAGCATGTCTGTGTACACCACCCACTGTCCCCCACGACTCTCCCtcaacctccccctccccctctccctcaacCTCAATCTCTGCCTCCCCCCCGTTGACACACCTGCCGCTGTGGGCATGGAACCGGGACGACGGTCGCTTGACACCCCCTGCCACAGGCCAGAGACGGTAGTGCAGTGCAGAGCCGGCCTCCATGCTGTCTGCTATGCGGCTGCCGTCCCAGGCCTCCTAGACCAGGCACAGCAGCATGGACGACTGGCCCAAAGGGTACGTGGCGCCGCCCAGCACCAGCTCCTCTCCCGCAATGCCCTGCGCCGCCTCAACCTGCTGCGTACTGGAGGGGCCAAGCAGGTCAAGACCACCACCACCTATCTACACCAGCCTGGCCAGAGGCATCTCAACTACTGAGGTCCTGGCCCTATCCCTTACCCTCCAACCATCAATTCATCCATCTGTCTCAACCTGGATCCACGAAAAGAGTTCATCCTGCAACATGCTCTCCATCTTCCCTCCATCCACCGATCCTCCACTCTGAAATGAAGAGACGTGATGAGGACTCCTTTAGAATAAATGCCATAGGTCACTTTACTCCGCCGCAGGTCCCCACCACCACATGGTAACTGGGAGAGACTGGTTCAATTAGATATTACACCTGTGGCGACACTCTCCGCTTTCACCCACTCTGCAATGGTTGTGTGGTGTCATAGTGTGGCTGTATATGCTGCCATAGAATGGTTGTGTGATGTCATTGATTGATATCATGGAGTTGCTTATATGCTGTCGTAGTGACATTGTAAGTGATGTCATTGAGTTGTTGTATGCTGTCATAGAGTGGTTGTGTGCTATCAGAAGAGGGTTTGTGGCTTAATAGAATGACTGTGATGTCTTTAGAGTAGGAGTAGGCATTTAGAAAAGGAAAAGTCTTTCACTTGAAATTAGGACAGTTTAACAAGGTTGTTTCTCATGCCCCTCCAATGAAATTGCTTCCTCTCTCACTTCATGGCAAACTAATGTAATTTGTCATTCTGATGGCCACAACTTACTTTTCAAAATCATCACCTCCCCTCTCTTGACTATGGGTGAACCTGCCTTGAACTTAGTAATTCAGTACTTTCACAATATTGTTTGAGAAAATGATGGTCAAATACTGGGTTAAATATCACTAAACGCCTTGTTATAATAGTAGAATttaagataaaaataaataaatgtaaaatgtatttaaaaaaaattccaTAATATTTTTTAAAAGAAAAAAAACGTATATTACATATCAGTATGAAGTTAGTATGAGTGTTTATCTACATAGGTATGTTTGTAAGCGGCGGTTTGACTATGTTAGTGTGTGATTTGTTGCATGGTTGTATAGCGCTAGTCTCCAGATGTTGAgaaaacagaagaagaaaaatgTTTTTGTATCTTCTCATATTGTTTGTTCTAAATCTGCAGTCCACTTCTCAGGGTCATAGCCAATCACCTTCACACTTTACTAAAATGCAGATTACTTGACGGATGTTAATTGTCTTTGTACATACTGGAGCCCTTCCAAATTTGTCATAGTGTGCTTTGCCTTGTGGTAATGTTTGTGATCAATGATTGACCTTTTAAAAGAATTGTGTGCGTCTCGATAAAATAGAATTTGAACGTTTGCTTGTCCAAGGACTGTGAAAATGAACTCCTACTCTCTCAATCGACTGTTATAACCCACCAAAATGGAGTGAAACCATTAGTCTTTTTAATTTtagtttgtgttttttttctgtgtACTTTCCATTGTTTTGAGTTAGATTTTTGACCTGTTCTTTATTTGCTTAGTTACATAACTTAGTAATATTATGTTAAAATGTCAACCAAAAAAGTAGCAGCAAACTCTAACCTTGCAATAGTTTATATTACTATTGTTTTTGCTTTTACAGTATATTCTTCTTTACTTTAACAATGTTTGCAAATTGAAGACTTGTGTTCTGAAATGGTCAAGTTTGTGACAACATGAATCTGTGCACTGTAGTGGTAAGAAAGCACAGAGACAACTCAAACACCCAAATAGCCTATTTTAGTTTCACAGAACCTCTAAAAGTCAAGTATCCAGGGCAAACTCAATCATATTACGATAACCTGATATTATGACCTAATATCACCTGTTTCTTTGTACTTATTGGGGGAAATACAcagtacatacatgcatacatacatactccGATGTATTTAGCATGGTAGCATTAAGAAGCAGTAAGGTGGTTTTGTGTGGTTTTGTCTCTATCGTTGTAAACTGATTTATAGTGAAGTGATTTAAGCCTAGCCATTgtattgtgtttttttattttcaaatttCTCCGATTGCAAATCATTTGACGTGTCAATTTTTGTACTGCATTGTTGTGACACGGGCAACAGAACGAAGGGAATGGAGGAGATGGCTATGTCCTCATTTTTGATGTGTGCTGGAAGGAGCCATTTTGTTTTGTCCTCGGCTGTCTGTCTGAGCTCTTTGATAATAACAGGGATTTGTATTTTGTTTTATGCCTTGAATTTGTTGTGGATCACGTGCCTTCCAGGTTAAACAGTATAATGACAATGCATTAATGAAGAACTTGAACTGTTGTCCAAAAGGACAACACATACAAAAGAAAATCAGCTATGCACACAGGAGGTAGCTTCTCTTCGTGAACCACCCAGCCCATGTACAGCTTTTATACACAAATGTAGCAAACCCGTTTTCTCCTGTGGAAAATTTggtggcattttttttttttactacgtGTTAGACTtctgctttggtttagtttactGGAATAATACAGCACTTTGCCAAAAAAAGTGTAGGAATTTGAGCGTTAACTGTTATTTATCTACTTAACTGATTGCATTATTTGTATTTTGGACGGATGAGAGATCAATTCACTCTGTTTTTATGGTCAGCAAAatttgcaaatgagaatgtgGTAGTCTGTTCTAAAACTGTAATACATGATCTGTTGTCATGATGTAAGCCACAGTCTACAATAAATGTTTTCATACACATA

Function

GO: NA

KEGG:

id description
K15310 TP53INP1; tumor protein p53-inducible nuclear protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269502 lncRNA downstream 21163 22283880 ~ 22284776 (-) True G235785
TU269458 lncRNA downstream 64007 22241024 ~ 22241932 (-) True G235750
TU268955 lncRNA downstream 210901 22092314 ~ 22095038 (-) True G235312
TU268925 lncRNA downstream 288625 22016919 ~ 22017314 (-) True G235283
TU268921 lncRNA downstream 292375 22013257 ~ 22013564 (-) True G235279
TU269516 lncRNA upstream 1393 22318926 ~ 22319165 (-) True G235793
TU269517 lncRNA upstream 1822 22319355 ~ 22319576 (-) True G235794
TU269495 lncRNA upstream 4632 22322165 ~ 22323438 (-) True G235779
TU269448 lncRNA upstream 26631 22344164 ~ 22347983 (-) True G235740
TU269524 lncRNA upstream 39845 22357378 ~ 22357604 (-) True G235801
XM_021593534.2 mRNA downstream 3925 22294867 ~ 22302014 (-) True LOC110513832
XM_021593527.2 mRNA downstream 214611 22089856 ~ 22091328 (-) True LOC110513818
XM_021593499.2 mRNA downstream 254465 22043389 ~ 22051474 (-) True LOC110513791
XM_021593504.2 mRNA downstream 254651 22043389 ~ 22051288 (-) False LOC110513791
XM_021593512.2 mRNA downstream 254682 22043389 ~ 22051257 (-) False LOC110513791
XM_021593560.2 mRNA upstream 7189 22324722 ~ 22336054 (-) False LOC110513910
XM_036972158.1 mRNA upstream 7189 22324722 ~ 22336054 (-) True LOC110513910
XM_021593568.2 mRNA upstream 18929 22336462 ~ 22341729 (-) False LOC110513923
XM_036972186.1 mRNA upstream 18929 22336462 ~ 22341729 (-) False LOC110513923
XR_005041742.1 mRNA upstream 18929 22336462 ~ 22341729 (-) False LOC110513923
TU268720 other downstream 550438 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 562528 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 807107 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 835994 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 850223 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 256300 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 839576 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1453991 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1863023 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1863023 24180556 ~ 24183964 (-) True G237657

Expression Profile