RNA id: XR_005041742.1


Basic Information

Item Value
RNA id XR_005041742.1
length 2004
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110513923
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22336462 ~ 22341729 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTATGATTATGGGAGCTTAAAAGTAGAGTGAGCCAGTTACACACTTTCAATGTCGATGCTGTCATATGGCAACAATTTCAATTAATTGTCACTTTGCATTGGTCCTGATATGGCATGGTATTTGGATTTCGGAGTGCAACAATATCGGTCCCTCATTGGATGATGACCCATCTCCTTACTCCTACGGCCATAACCATGGACCCTCACACTCCCACCGTCATGTCCGAGACTGCCAGCCCGTTGTCCATGGCAACGTCGCCCACCAGACCTGGCCCGCCAGCAACCACACTGGGGTGCCCGCGGCTGAGTCCAAAGTCTTCATCTCTGACGTCCCTGGCACAACCCGATGGGTCACAGGTGACATTGCAGTGGTCCACGACCCACTGAGGACAGTGTCTGTGCTGGAGCCGAGGGGGTGCGGGGTGAACCAGCGGGAGGCGGTGGAGGAAACGGCTAACGTCGCCAGGTGTCTCTATGCCCAGAATGGAGGGTTCTTTGGTACTAGCACTGGGGAGTGTTTGGGGAATGTAGTCAGTGACGGGGTGCAAGTGAGGGACAGCCGAGGGGAGCAGAATGCCCAGTTTGGCATCAGGAGGGACGGTACACTGTTTTTTGGGAAAGAGCTGCCGGTCTTGTAAAATTtccttctcaatctctctctactCAATTTGAGCTCCATTTGTGGTTTTAATATCTAACATAATTTTTTCTAGACAAATGCTGTCAAGGCTTGTAGTTGAGTTTGTGGAACACTGATCCTGTTATCATAAAATATGAAGTTCTTATGTTTATAACCCTATCGCGTAATATGACGTCTACTTTGGAACATAACCAATTAGATTAGAACGGGACTCCCTGTTCCCTGGAGAAGTGTTGTGTTGACCTGTCAGTCATTCTGTGTAGAGTAATGGCTCTAACTTGGAATGTTCCTGTTACCCAGATAAGGGTGTTTACGTTCATGCACGTTTGATGGGAAAAATAAGAGCAGTGAAAAAGCAGTGGTCCTTGAACCAATAAAACCAGCCACCTGGAACAGACGGCTGCTTGGTTGTTGTGGCGTGGCTGAAGTAATATTGTATGGGCAGACTCACCAAAGCATTCAATGTGTccaatgtgccccccccccccccccgcctgagGGCTGTCAACACTAAGATATTTAACTGTCACAAACTGAAGTATAAACATTTCTTGTGGAAGCCAACAAAGCTAGCCaggtgaaaaaataaatattttacctttatttaactaggcaagtcagttaagaacaaattcttactttcaatgacagcccactgttcctaggctaactgcctgttcaggggcagaacaacagatttggtCCTTGTcagtaaccttttggttactagtccaacgctctaaccactaggctaccctgatgtGTACAGAGATTTAGGATGCACTTGAGCTTTTGGCTGCCTTTTAGAAATATTTTATCTCACTAGATTGCTGAATGTACCCTTTTTAACATGAGTATCGAAGTATGTGCTCTCATGACCACATTGTTCCACAGTTGGTTATTCCTTTCTTGAGATGGCACTGGATGATGTTAtttactttttcctcatttttgtCCCTGATTTTCcctctttacatccctgtttctCTACTTTTTTCCCTCAAGTTATCTCTCTGATGAGGCCAACCCCATTGTGCAGTTGGTCAGTGGGGTGGTGTGGCTGCTCCGAGACAGCCAGGTCTACATTAACCAGAGCATAGATGCTGAGTGAGCAAGGAGACAGGTCGCTACTGAAGGATACTGAGGATGTCTTCAACTTAGCCATACTTACTTAAAATGCTAGAGGGACTTTCCGCCATTTTGTGGACATGATGTCGGCCAGGACAGCGGTTGGTCACGATGAGGAGGGGAAACGGATCCtgtcttttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacggcctacgaacagtgggttaactgcctgttcaggggcagaacgacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269495 lncRNA downstream 13024 22322165 ~ 22323438 (-) True G235779
TU269517 lncRNA downstream 16886 22319355 ~ 22319576 (-) True G235794
TU269516 lncRNA downstream 17297 22318926 ~ 22319165 (-) True G235793
TU269502 lncRNA downstream 51686 22283880 ~ 22284776 (-) True G235785
TU269458 lncRNA downstream 94530 22241024 ~ 22241932 (-) True G235750
TU269448 lncRNA upstream 2435 22344164 ~ 22347983 (-) True G235740
TU269524 lncRNA upstream 15649 22357378 ~ 22357604 (-) True G235801
TU269528 lncRNA upstream 18945 22360674 ~ 22360888 (-) True G235805
TU269533 lncRNA upstream 22820 22364549 ~ 22364762 (-) True G235810
TU269532 lncRNA upstream 23382 22365111 ~ 22366009 (-) True G235809
XM_021593560.2 mRNA downstream 408 22324722 ~ 22336054 (-) False LOC110513910
XM_036972158.1 mRNA downstream 408 22324722 ~ 22336054 (-) True LOC110513910
XM_021593541.2 mRNA downstream 18929 22305939 ~ 22317533 (-) True LOC110513844
XM_021593542.2 mRNA downstream 18937 22305939 ~ 22317525 (-) False LOC110513844
trnas-aga-55 mRNA upstream 102361 22444090 ~ 22444171 (-) True trnas-aga-55
trnas-aga-56 mRNA upstream 102553 22444282 ~ 22444363 (-) True trnas-aga-56
trnas-aga-57 mRNA upstream 103763 22445492 ~ 22445573 (-) True trnas-aga-57
trnae-cuc-2 mRNA upstream 105015 22446744 ~ 22446815 (-) True trnae-cuc-2
LOC110503922 mRNA upstream 105398 22447127 ~ 22449700 (-) False LOC110503922
TU268720 other downstream 580961 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 593051 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 837630 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 866517 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 880746 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 232104 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 815380 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1429795 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1838827 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1838827 24180556 ~ 24183964 (-) True G237657

Expression Profile