RNA id: trnas-aga-56


Basic Information

Item Value
RNA id trnas-aga-56
length 82
RNA type mRNA
GC content 0.54
exon number 1
gene id trnas-aga-56
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22444282 ~ 22444363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgtcgtggccgagtggttaaggcgatagACTAGAAATCTATTGGGATCTTCCCGCGCAGGttcgaatcctgccgacaacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269572 lncRNA downstream 15758 22428231 ~ 22428524 (-) True G235846
TU269569 lncRNA downstream 19753 22424213 ~ 22424529 (-) True G235843
TU269532 lncRNA downstream 78273 22365111 ~ 22366009 (-) True G235809
TU269533 lncRNA downstream 79520 22364549 ~ 22364762 (-) True G235810
TU269528 lncRNA downstream 83394 22360674 ~ 22360888 (-) True G235805
TU269576 lncRNA upstream 2729 22447092 ~ 22448225 (-) True LOC110503922
TU269492 lncRNA upstream 50687 22495050 ~ 22495924 (-) True snrnp48
TU269586 lncRNA upstream 81040 22525403 ~ 22526021 (-) True G235860
TU269633 lncRNA upstream 138462 22582825 ~ 22584854 (-) True G235900
TU269650 lncRNA upstream 155467 22599830 ~ 22600792 (-) True G235916
trnas-aga-55 mRNA downstream 111 22444090 ~ 22444171 (-) True trnas-aga-55
XM_021593568.2 mRNA downstream 102553 22336462 ~ 22341729 (-) False LOC110513923
XM_036972186.1 mRNA downstream 102553 22336462 ~ 22341729 (-) False LOC110513923
XR_005041742.1 mRNA downstream 102553 22336462 ~ 22341729 (-) False LOC110513923
XR_005041743.1 mRNA downstream 102553 22336462 ~ 22341729 (-) True LOC110513923
trnas-aga-57 mRNA upstream 1129 22445492 ~ 22445573 (-) True trnas-aga-57
trnae-cuc-2 mRNA upstream 2381 22446744 ~ 22446815 (-) True trnae-cuc-2
LOC110503922 mRNA upstream 2764 22447127 ~ 22449700 (-) False LOC110503922
XM_021593617.2 mRNA upstream 13049 22457412 ~ 22460489 (-) True LOC110514021
XM_021593599.2 mRNA upstream 18017 22462380 ~ 22488022 (-) False LOC110513982
TU268720 other downstream 688781 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 700871 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 945450 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 974337 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 988566 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 129470 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 712746 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1327161 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1736193 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1736193 24180556 ~ 24183964 (-) True G237657