RNA id: XM_021593617.2


Basic Information

Item Value
RNA id XM_021593617.2
length 1936
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110514021
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22457412 ~ 22460489 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGGAATCCCCTTAGTTTCACTTCCATTTTAGCTTACTATATAAAATGATTCACTTATTTTCTGGATCATCATCTTCATTGCTGTAGTTCTACAAATATGTTTTTTCAACTCGTCTGCATTCTAGCTGCCTACTTGCAAGGTGGGCTTACACAGGATAAGCCTACACAAGAGGTGAAGTCAGTTTGTGGAGAGGACTCAATTCTGAAATGTAAAGCAATACGTAAGCCTGGGGTCCAGTACCGGGCGGTGAGGTGGTACAAGCTGGGTGAGAAGCCCTATAATAAGGAGTCTGGTCTATTGATGAAGAGGCTATCACCTAACAGCACCACCCTACGGTTTGCAGGTTTGGAGCGTGAAGTGGAACTTTTGGCTGACGATTCTTTCGATATCTTCCTGCCCAATGTAACGGCTGTTGATAGCGGGAGGTACAAGTGTCTCCTGGCAGCACCTGTAGGAGAGCAGAACCAGGAGGGGCAGGTTCACCTCAGAGTGACAGGTTGCCTTGAGTCCACATACCAATCAGAAGAAATGGATACCATTCTAGTTCTTTCCATTGTGGGGATTGTTGCGGCATTGCTGATATTCACCATCAGCTATGTCATCCTAAGGAATATGTTATTGCAAAGGAGTAAGAAGTATCCACAAGAACCACTTCTAGATGCACCCCTTGAGAAAAAAGATTTAATGTTGATCTACACTCTGGGGCCAAACTGGTCAGGACAGGGTTCCATAaaacatgtctgtgtgtgagaccCTGTTCTGCTAGTTTGGGCTCATTGTATACTTGAATGTGAAGAGGAAACACAGAGAAAGACTAGAGCCCATTTGAAGCTGAGCAAGGAGCCTAAGAGTCATGTCTACTTTCCAGAGAGTTCACGTCTAGAGCAGAGGGAGGCAGACAAACCTCTGGACGATCCTGTAGAACTAAATTGTGTAGGTATGACTGCAGCATTCAAGAGCAAGGAGCAGGGCATGGTGAATGGACCCCACGATCTAAGCCCCAAGATCAAACCCCAACAAGGAACTTCAGGAAAGGGAGAATAAATAATGAATGATACGGCGTGTggggttctgagaatatgaaatatacttattcatgtcactgagggagagagggtaatgtataacgtttacattatatCAGGGATCctatggttatctgtaggaggaaggtatatagtgtgtgcaattaagcttggaatgtgcTGAGTGCAGGGAAGCGATCACATAtggcaggcattgataaggggagagagccatggattagtgatgaagggggtcgaggtcaggtcaggtcacgttAAGGGAGAAAGAAAAGTTTATGGCCATATTACTTAGTTTCCTGCCTAGCAGTAAAGATACAATCAGAtgggtaggaggagactcagcctaagagaaagggttaaatatcagtgcttgtgtgaaaatctttttgtctaatgcagctgtattgatcctctgggaagaataaacttggtaAAGCTTTCATAGTGCCATTGAGTTTTTACTCTGAAAATTAGAACCTAATAGGGGTCATTCTGCAGGGTCTTTCCATGGCAATGTTGGGGTTAATTCCATTTACATTTCAGTCAACCCAGTCAATTGAAGTTTCAGTAATTGGAAGATGAAATTGATTTTGAACTGGAAAATGATCAATGTGCACTGCATTGAATTTCATGCCTAATTAAAATCCTTTATTGACAagtattgaaatggaattgatctGAGTACTGTTCAATGGGACTCACCCGTGTTGGAAGGATTTGGTGGGACATGCTGGACTCTGCACAGAGAGATGAAATCAACCAAGACTGCATTCCATCTGAGCCAAGCAAAGCTCTCAATTAACTCTAATGTTCAGGAATTATCGATAACTTTTAGTTATTTTAGTTTTGTGAGGTCAAAACAGTATATACTTTTTTATGCAGAACCAAA

Function

GO: NA

KEGG:

id description
K06510 CD83; CD83 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269576 lncRNA downstream 9187 22447092 ~ 22448225 (-) True LOC110503922
TU269572 lncRNA downstream 28888 22428231 ~ 22428524 (-) True G235846
TU269569 lncRNA downstream 32883 22424213 ~ 22424529 (-) True G235843
TU269532 lncRNA downstream 91403 22365111 ~ 22366009 (-) True G235809
TU269533 lncRNA downstream 92650 22364549 ~ 22364762 (-) True G235810
TU269492 lncRNA upstream 34561 22495050 ~ 22495924 (-) True snrnp48
TU269586 lncRNA upstream 64914 22525403 ~ 22526021 (-) True G235860
TU269633 lncRNA upstream 122336 22582825 ~ 22584854 (-) True G235900
TU269650 lncRNA upstream 139341 22599830 ~ 22600792 (-) True G235916
TU269655 lncRNA upstream 147388 22607877 ~ 22608110 (-) True G235921
LOC110503922 mRNA downstream 7712 22447127 ~ 22449700 (-) False LOC110503922
trnae-cuc-2 mRNA downstream 10597 22446744 ~ 22446815 (-) True trnae-cuc-2
trnas-aga-57 mRNA downstream 11839 22445492 ~ 22445573 (-) True trnas-aga-57
trnas-aga-56 mRNA downstream 13049 22444282 ~ 22444363 (-) True trnas-aga-56
trnas-aga-55 mRNA downstream 13241 22444090 ~ 22444171 (-) True trnas-aga-55
XM_021593599.2 mRNA upstream 1891 22462380 ~ 22488022 (-) False LOC110513982
XM_036972237.1 mRNA upstream 10874 22471363 ~ 22488022 (-) False LOC110513982
XM_021593592.2 mRNA upstream 12598 22473087 ~ 22488021 (-) True LOC110513982
XM_021593613.2 mRNA upstream 28332 22488821 ~ 22494016 (-) False snrnp48
XM_021593606.2 mRNA upstream 28332 22488821 ~ 22495904 (-) False snrnp48
TU268720 other downstream 701911 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 714001 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 958580 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 987467 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 1001696 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 113344 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 696620 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1311035 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1720067 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1720067 24180556 ~ 24183964 (-) True G237657

Expression Profile