RNA id: TU269168


Basic Information

Item Value
RNA id TU269168
length 2541
RNA type TUCP
GC content 0.54
exon number 6
gene id LOC110514034
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22460524 ~ 22472917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTACGAAATGAAGACGGGACAGCCAGGGTCCTGTATGAGGTGTTAATGTGATCTCATTGAATTACATATTCTGGGGGTGATGTCTCAGGTGCGCGTGCACTCTCCACTGGAATTGTATTTCTTGAGCATATCATGGCGATACGAGGCATTATCCTGGTGTGTTCCGTCTTATTGTCCGCAGCCCTTGTCGTGGAGAACATTCCCTACACATGTCAAGAGGGTACAATCACACTTGAAGCACCATTTGGAGCAATGGATCCCCATTGTGAACAGAGCTGGACCACTGGCAAAAAGCCCATTGCCTACTACAAAAATGGCAAAGGTGAATGCAGGTTTCCATGCAAGCACGTGTTCTCTGGCAAAGTCATCCTCCGAGAATGTCCCGATGTCATATTAACTACTGGTTGCACCACCAAAgATGGGGTATATGAAGAGACCAGGCTACACTTCTCAGTGATAACCAGACCAACTGTCTCTATGACAACCACTAACACTGCAAACAAGCAATTCTATGGACTCGGGGCATTCCTGATTCTTTCGGTCTCTATGATCATTCAATTTGTACTGTAGATGTGGTCTGAGGGGCCTCTCCCATTGTTGGTCCTAGATTGTTGGTCTCCAAAGAACCCAGATTGCATCCTTTATCCTGCCATTGAAGAACAGTTGTGCATTTGTAGTGGTTGGGACACACTACACAAACTAACATCAAAGTTGAGCCAATAGTATTATAGACATCTATCTACTCAGGACCTTGATTGCTTTTTAAAGGAAGAATATGGCTTCCGCCACCAATCTCCAGACTCTAATTGCATGTTTTAGTCTCATTGCTGTCTTCTATGCACTTTTTTACCTTCTGTTTCAATACTCTGCAAACTAAGTTTACATGTAGGATGGGTGAAGTTTACGTCATGTAGTTTCAcctaagagagaaagaaagaaagccatAGTGTTTTTTGACTGAACACAAAATTAAACAGGAAATGTGTTGCTGCTGACCACTGCCTCAACATGTTGTGCCATGTAGACAGTGTTATTTATTACATATATTTATGAAGCTATTTATTACCTATTAATTCTAAAAAGCACAAATTACCAAAGTATGAATGTACAATTAGCTAGAAAAACAAGCTGTGAAATGGTCCATTACAAGCCAATCATCTCTCCTATGGACAATGTTTTGGCACAAAATGGCAGTACTTCAATATGCCTTGGGACCAATGTCAAATTGTATGTGTTTTTATGTCCCATCAAATTAAGGAATTTATTTTGCAAGATTTtaagaatatatattttaagtAGTGTCCGTTTTTAAAATAATATCCACTTTGCATTGGACCATTTTGTATTGGTACAAATATAGCTACACCTACTGACCCCTAGATCAGACAATAAGCTTAGAGACAAGTGACTCAATGAAGTGGATAGATTTCACCAGGTAGATTTCAGAGAGATATACTGTAAAATATTGTTTAACACTTGGTATTAATAATACTTATTACCTGCCCCCAGTCCATACAACCAAACACTTTTATATGAACTAACAACCATCATTTTACACACATTAAGAGGAGCCCTTTTGAACATGAGCAGCGTTAAACAAGTTCATTTTCTTGTCCGTTGATGCCATGTATGTGTACTTTCGTAGCATAGTTGTAATGTTTTGCATGCTTTTGATGAGACTATCACCCATGTTCATGTTCTGCTCATTTTCTAATCTGTCATGTGATGTGGTGGTgatgcattaaaaaaaaatgtttccaaACATTGTGATGCATTTTTATCAGGGTTCTGATTGCCAACATATGTACACAAAAGTACAAATGTTAAGAACACGTGTAATATAATTGAGTTTACAGGGCTATGTTTCCGCCTTGTAACGTGTTGGGATGATTCTCAAATGAAGATTGACAATGACAAAAATATCAGTTAAGAGGAGTTGAACATCCTGTTCACGTGAATGTACATGAAAATCTATTTAATAAATCAAAACCTACATCCAATGAATATAGCAAATTAATTTAATCGACAGACATTTTGTGCTACAAATCATTGGCAGATTATATAACTATATAAATTCCATATACAATACACACTGTATAACAAATGTCCATGTATTATTTTTAATATGAAATAATATGAAATAGTACGTTTTTATTTTATATTGATCATTGTTATCTTGTCTGTGAACATCTGTaaatgtgtcacgacttccgccaaagttggctcccctgcctgttcgggcggtgctcggctgtcgtcgtcaccggcctactagccgccaccgatcccttttcctttttctgttggtttagtcttattagttgcacctctGTCCTATTATGTTTTCCTGATGGGCGTCCTTATTTAAGGCTAGCAAACCCGCCATTGTTTTCGGCGGGATTATTCTGGTGTTACGTGTTGTGTTGTTGGGTGTGTTCATGCTCCGGACTGgctaccctgtgttttgggttggtccgTATTTTCGAGCCCTGTGTTTGGGCATTGTATTTTGGTGCCACATTAAAGTGCACTTCTCCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269165 lncRNA upstream 74 22459160 ~ 22460466 (+) True G235495
TU269167 lncRNA upstream 1450 22457195 ~ 22459090 (+) True G235496
TU269146 lncRNA upstream 18457 22441825 ~ 22442083 (+) True G235484
TU269109 lncRNA upstream 36434 22366840 ~ 22424106 (+) True G235450
TU269100 lncRNA upstream 124508 22335687 ~ 22336032 (+) True G235442
TU269153 lncRNA downstream 9555 22482472 ~ 22488203 (+) True LOC118947118
TU269231 lncRNA downstream 106561 22579478 ~ 22579807 (+) True G235545
TU269249 lncRNA downstream 132986 22605903 ~ 22606114 (+) True G235563
TU269250 lncRNA downstream 133468 22606385 ~ 22606585 (+) True G235564
TU269182 lncRNA downstream 139126 22612043 ~ 22618089 (+) True LOC110514168
XM_021593581.2 mRNA upstream 19075 22430621 ~ 22441465 (+) False LOC110513964
XM_021593583.2 mRNA upstream 19075 22430621 ~ 22441465 (+) True LOC110513964
XM_021593569.2 mRNA upstream 55723 22376761 ~ 22404817 (+) False LOC110513938
XR_002472055.2 mRNA upstream 55723 22376761 ~ 22404817 (+) False LOC110513938
XM_021593573.2 mRNA upstream 55723 22385901 ~ 22404817 (+) True LOC110513938
XR_005041774.1 mRNA downstream 13135 22486052 ~ 22486516 (+) False LOC118947118
XM_021593647.2 mRNA downstream 40207 22513124 ~ 22544099 (+) False LOC110514095
XM_021593653.2 mRNA downstream 40209 22513126 ~ 22544099 (+) True LOC110514095
XM_021593667.2 mRNA downstream 84205 22557122 ~ 22575110 (+) False LOC110514114
XM_021593660.2 mRNA downstream 84245 22557162 ~ 22575110 (+) True LOC110514114
TU269077 other upstream 155634 22304493 ~ 22304906 (+) True G235426
TU268551 other upstream 392460 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other upstream 392460 22058679 ~ 22068080 (+) False LOC110503910
TU268500 other upstream 440556 22017594 ~ 22019984 (+) True kiaa0319
TU267870 other upstream 1173538 21286726 ~ 21287002 (+) True G234340
TU269263 other downstream 199819 22672736 ~ 22698834 (+) True G235571
TU269259 other downstream 200608 22673525 ~ 22680728 (+) False G235569
TU270030 other downstream 676235 23149152 ~ 23180299 (+) True G236271
TU270066 other downstream 725935 23198852 ~ 23199075 (+) True G236301
TU270145 other downstream 873963 23346880 ~ 23349378 (+) True G236370

Expression Profile