RNA id: XM_021593599.2


Basic Information

Item Value
RNA id XM_021593599.2
length 2547
RNA type mRNA
GC content 0.57
exon number 27
gene id LOC110513982
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22462380 ~ 22488022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCCCTGTGTGtatttggggttagggttagactcagGTATTTCTCACCCTGTCGAGGAGAAGAGGGAGCCGAGCCCGTGGCTGCCTGAGAACCTTATGgaaccctgagagagggagagcaagggagagagcgagaggaaggggAACCAGTGCCGTGAGTGGGGAGCGAGAATGCTGTAAAGAGCACAGTTCAGGGAGGAAATAAACTGGACTTTTCTGtctatattatttttttaaactggacTATCTGATACGTTGAGTGAGTGTCTGGTCTCAGTGGATTATACAGAACCAAACAGACAGAACCAGCACCATGGGAGCCCCCAGGGTAAAGGTGTCCGTTATCTCGCCGCTACTCGTGCTCCTATTgtgcatccctccctcccacgcGCAGGACGAGTACTCTGGTTACCACTCAGGTGATGAACACACCTATGAGGGCTCCTTGGTCGACAACTATGAGCATTCAGGATACCCACAACCAGAGGAATACCCACCGGAGCACACTCACAGCTATGAGGAGCAGCAACCCTCATCTGGATATGACCCCTATGTACCAGCCCCCACCAGCGTGAGCATGATCACAGAGGACTCCtacccctacaccaccaccacacagGTGCCATACGAGCAGGAGCCCTACTACGAAGAGTCGCTCCAGGCCCCTGGTGGTGGGGAGGCTTCTCTGGGGGAGGAGGGGCCAACAGACTGTAACTGTGAGCCAGGAGAGCCAGGGTTCGCTGGGTTTGCAGGGCCCAAGGGAGCCAGAGGACTGCAAGGTAAAGATGGCTTCCCTGGGGCTCAAGGACGCGAGgggTACAAAGGATTCAAAGGAGTTctaggaagaggaggagacacaggGCCTGAGGGTGACTCCGGGCCTGATGGGGAGGATGGTGCCTCTGGTTTCTCTGGAGCCCAGGGCTTGCCTGGTCTTCCTGGCGATCCAGGTGAGACTGGGGTGCTAGGTCTGAAGGGTGACATCGGTATGGAGGGGCCACGCGGAGGAGTCGGGGTAACGGGTGAGACTGGTCCAATTGGTGAGGCAGGGCCTGGTGGGCCTGATGGAACTGGAGGTATCAAGGGATCAACTGGAGCAGAAGGGAAACAGGGTCCTGAGGGAACAGAAGGGGAAAAGGGTCAGATTGGAGCACCTGGATTCTCAGGAGACCATGGGGAGATGGGCTATAATGGGTATCCTGGAGAGccaggaggcagaggagagactGGTCACAAGgGTGACCAAGGCCCAGGGGGCATGCCAGGCAGTGATGGGGAACCTGGAGAGGATGGTCCTCTTGGAGTTCCCGGGGTGATCGGCTTTCCTGGAGAGTTTGGACAAAAGGGCGCGAGAGGGGATCGTGGTGTGAGGGGACCTCTTGGGAGAGTAGGAGCTGGGGGGCCtcaaggagagaggggagatgcaGGAGTTCCAGGGAAACCAGGACCTAAAGGCCTGCAGGCCCAGCCTGGAGCCAAAGGGGAGACAGGTCCCGATGGTGATAAGGGTGGGGTTGGAAGAACTGGAGtgaagggagggaaaggagacAAGGGAAGTTTTGGAGCACATGGTGACAAAGGACAGCAAGGGGAGAGAGGTACCATCGGCCCTGATGGCATTGTTGGACGAAATGGACCCCCCGGCATCCCAGGCTCCAGAGGAGAGCCAGGTCCAGGCGGTGACCTGGGCGTCAAAGGTGGCTCTGGACCTAAAGGAGTGCCAGGTGCCCCTGGCCCTGGGCTGACAGATGAGCAGGTATTGCAGCTGTGTAAAGGAGTGGTGACAGCCCAGATCTCCCAGTATGCAGCTTCCATCCGGGCCAAGTGTTCCCAAGGCTGCCCCATCAACAACCGCACACTCATTGGGCCGCCCGGAACCAGGGGACCAACTGGAGAATCAGGCAAACCCggtaAAGCGGGCAAAGCTGGAGTCAAAGGAGCCAGGGGCATCCAAGGGGACACAGGAGTGGATGGTCAGAAGGGGgcagagggggaaagagGAACAAAAGGTCCGAAAGGAAAGGGGGGTGAGCCTGGTAAAGGTCTGCCAGGACACGATGGGCATCAAGGTCTCAGAGGGCTGCCAGGCCACCCAGCAGAGCCAAATAACGGTATGGCAGGTCCCAGAGGGCCCCGTGGTTTCACAGGCGCTTTAGGTCAGCCTGGCATGGCGGGCAACGCAGGAGTGCCCGGCTTCTGTGAGGCACGGGACTGCAGCATTCACGCGCCTGTGATGCGCAAGGAGCAGGGCCTAGTGAAGGGACCCCGCGATCTAAGCCCCAAGATCTAACCCCAACAAGGAGCTTCAGGAAAAGCTGTCCACAGGAAGTGAATGTTGTCTGGAGGCATGGTGGAGATAATTGGGCAGAGAGCTTATGGTTTTGTTTGGTGAGAGCACATTGCTAATGAAGTTTGAGCTTCAACTGAGAACTGGAGAAAATGGACGCCTTTCTCCTGGGCTGCATCACTCATGAGCCCCTTTTGTTTTCTTAGGTTTGTGTGTTTCTTCTGATTTTTTAAATAAACTATCTTGGTTTAAAAGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269576 lncRNA downstream 14155 22447092 ~ 22448225 (-) True LOC110503922
TU269572 lncRNA downstream 33856 22428231 ~ 22428524 (-) True G235846
TU269569 lncRNA downstream 37851 22424213 ~ 22424529 (-) True G235843
TU269532 lncRNA downstream 96371 22365111 ~ 22366009 (-) True G235809
TU269533 lncRNA downstream 97618 22364549 ~ 22364762 (-) True G235810
TU269492 lncRNA upstream 7028 22495050 ~ 22495924 (-) True snrnp48
TU269586 lncRNA upstream 37381 22525403 ~ 22526021 (-) True G235860
TU269633 lncRNA upstream 94803 22582825 ~ 22584854 (-) True G235900
TU269650 lncRNA upstream 111808 22599830 ~ 22600792 (-) True G235916
TU269655 lncRNA upstream 119855 22607877 ~ 22608110 (-) True G235921
XM_021593617.2 mRNA downstream 1891 22457412 ~ 22460489 (-) True LOC110514021
LOC110503922 mRNA downstream 12680 22447127 ~ 22449700 (-) False LOC110503922
trnae-cuc-2 mRNA downstream 15565 22446744 ~ 22446815 (-) True trnae-cuc-2
trnas-aga-57 mRNA downstream 16807 22445492 ~ 22445573 (-) True trnas-aga-57
trnas-aga-56 mRNA downstream 18017 22444282 ~ 22444363 (-) True trnas-aga-56
XM_021593613.2 mRNA upstream 799 22488821 ~ 22494016 (-) False snrnp48
XM_021593606.2 mRNA upstream 799 22488821 ~ 22495904 (-) False snrnp48
XM_021593645.2 mRNA upstream 11423 22499445 ~ 22506678 (-) True LOC110514079
XR_002470693.2 mRNA upstream 59778 22547800 ~ 22548892 (-) True LOC110505130
XM_021593671.2 mRNA upstream 87925 22575947 ~ 22603330 (-) True LOC110514133
TU268720 other downstream 706879 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 718969 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 963548 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 992435 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 1006664 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 85811 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 669087 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1283502 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1692534 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1692534 24180556 ~ 24183964 (-) True G237657

Expression Profile