RNA id: XM_021593613.2


Basic Information

Item Value
RNA id XM_021593613.2
length 2590
RNA type mRNA
GC content 0.45
exon number 12
gene id snrnp48
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22488821 ~ 22495924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatgatgaaaattacaggcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtaatgcCATTTGCTTGGTTTCTCCATTCACTTGAATCCCTTTAGACATCAATGGTATGAACAGAATAGCGTTTTGTCAAATGTTCTTaggttctctcctctgtcccctgtgTCTTCAGATGGCCATGGCCTCACCCAAGAGCGTGTTCAGAACCCCTGGGGCTGGGCTTGTACTGAGAGTACCTTTGGCCCTGTCCACACAGACCTAGTTAGCATCCAAAGCCAGAGTGACACAGGGCTACATGCCCCTGAAATGTGGATTGATGTCCCCCCACACCAGCCCTCCTTGGGTGGTGCTGATGGAGAAGAATCACCCCAGCATTGTTTAGGCAGTCAATGGAGGAGCCACAGGACAGAGGGCCAtggctgtgtttgtgtgcatggacCAAGTGGACCAGGAAGATGTTGCCACAGtttggctggttcccctctcttcAATTTTGGAAGTAAGTTGAGGAAGACAATAATGGTAGGAGTCGAGGTGGAAATAGTGGAGGAAGTAGCCTATGAGGACACAGAGACACTTGAAGTAATatcAGAAGGAGTCTATCCAAATTATTTGATGGAAACCATATTGCTGCATGATGACCAGCTTTTCGCCACCTAAACATGCATTCCTTCAAAAGTTGTTTGCAAGTGAACTTTCTGTGTTTTTAAATGTCAGCCttgtattttaaatgtattttacatttatttaaatgtagtttaaatattaaaatgtattttaaataccATTTAAATGCCTTTTTTATGTCAGTGTTATGGGAGGTTCAttaattacaattttttttaccCAATAAAATAAGAAAACCTTTGCTTGTTGTCTTGATTTGAACTTCTAATGAAGATATAGTATATGTAACTTCCAAGACCTTCTGACAGTCTACACTTGCTTTGTCCATCCAGTGCTCCAGTACTCTGCTCAAGTATGGCAAGTCTCACAGCCCACCAAGTTGAAAAAATCTAACGACATGCTACCAAAATCATCATGGGCACcacctacacctacacctacacctgGGCTTGCAAAAATCAAACGCTCCAGGCTCGTCTGCGAAGTTTGGAAGAGTTGACGGAGTTCACCGAGAACTGCCAGAGACAACTGAATGAGCTGTTCGAGACGCTGGGATGGAGACAGGACCTGGACAACGGCTCAGTTCAGGAGCCGATGGAGGTGTGCCCCTATGACCCGAACCACAGAGTGCCAAGCAGGAGCATGGAGAGACACAAAGCCACCTGCCAACTCAGCCAGATGGGATACTCCCATGAGGAACAGGCTGAGATGTATGACACCTCTCTGTATTATGAGAATGCCAGCATTACCAGCTTCACAATGGacaaacacacacagcaacaagTGATTCTACAAGCAAGAGCAAGTGCACCGTCAATTAGGACAGAGGGACTGTACAGCCAAAGTGAATACTCCACAGATCCTTCAGAAGTTCCTCAGAACCACAAGCGAGCTATCTGTGACCTTACTGTGGCAGACCGACTGGCTCTTTTTGATCACGTGACAAGGGAGGCCATTCAACAGAAGGATCAAGCTGTTGCAACCGACAACGAGGACCTCTATGTTGATTTGGTGGCCAAGCTCAAAAAGGGTAACGATCAGAACGAGCACAAGTCTCACCTGGAGCTGATGGCTGAGATGAGGGACTACAAGAGACGGCGGCAGTCTTACAGAGCCAAGAACGTCCACAACACAAAGAAGTCCTACACTGAGGTGATTCGGGAGGTAATTAATGTCCACTCTGTTGAACTGTCCAGTCagtggaaagaggaggagaggaaggaagaggttAGAGAGTCCAAACATGCCCCTCACAGGAGAAGGTCTGAGGACAGACGGTCTGCCTCCACAGAGTCCCGCCAATCTCATGTCAGCTCCAGGGATGGACACGGCTCCCACCACAAATGCCAGCGCAGCAAAGACCCCAGCCCAGAGCAGAGCCAGGAGCGCAGCCGAGAGAAGGAGagcaagaagaagagaaagagGGAATCCTGCTCTCCGGATGAGAGACTTCATGATcgaaagaagaaaaagaagaaaaagaagaaaaagGAAGAGAAGTGATTTTCAAGTTTAGTACTTTGGCTTGGAAAACCAGAGATTAGGTCAAGGAGCCAACCAAAGCTACCTTCCAATGTTCATAATAGCGTACCACTTAGAATGCACGCCTTCATACTAAGTGCTCAATTCATGGCTTCATATTAAATGGTATGCATGTGTCGATATAGTAGTTTGACTCGCAGGCAAATCTTTCTTTGTTGTAATCTGATGATATTTTAAAGCAACAGTGGAGCTCTAAACATTTGTCTTAAACAGAGGTTATTAAATGCCTGTTGTATTAGATTACAGAATGTAAATAAACTGTTAGAACACGATTCTCGGAATTCTGTTGTACATTCACGATTACCCCTGTGTTGGATGTTTAAAGTTAAAACTACATTGTGTTTGAGCTTtgaatagagaataaaagcttcATATGTGTACTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269576 lncRNA downstream 40596 22447092 ~ 22448225 (-) True LOC110503922
TU269572 lncRNA downstream 60297 22428231 ~ 22428524 (-) True G235846
TU269569 lncRNA downstream 64292 22424213 ~ 22424529 (-) True G235843
TU269532 lncRNA downstream 122812 22365111 ~ 22366009 (-) True G235809
TU269533 lncRNA downstream 124059 22364549 ~ 22364762 (-) True G235810
TU269492 lncRNA upstream 1034 22495050 ~ 22495924 (-) True snrnp48
TU269586 lncRNA upstream 31387 22525403 ~ 22526021 (-) True G235860
TU269633 lncRNA upstream 88809 22582825 ~ 22584854 (-) True G235900
TU269650 lncRNA upstream 105814 22599830 ~ 22600792 (-) True G235916
TU269655 lncRNA upstream 113861 22607877 ~ 22608110 (-) True G235921
XM_021593599.2 mRNA downstream 799 22462380 ~ 22488022 (-) False LOC110513982
XM_036972237.1 mRNA downstream 799 22471363 ~ 22488022 (-) False LOC110513982
XM_021593592.2 mRNA downstream 800 22473087 ~ 22488021 (-) True LOC110513982
XM_021593617.2 mRNA downstream 28332 22457412 ~ 22460489 (-) True LOC110514021
LOC110503922 mRNA downstream 39121 22447127 ~ 22449700 (-) False LOC110503922
XM_021593645.2 mRNA upstream 5429 22499445 ~ 22506678 (-) True LOC110514079
XR_002470693.2 mRNA upstream 53784 22547800 ~ 22548892 (-) True LOC110505130
XM_021593671.2 mRNA upstream 81931 22575947 ~ 22603330 (-) True LOC110514133
XM_021593683.2 mRNA upstream 114588 22608604 ~ 22611971 (-) True LOC110514157
XM_021593677.2 mRNA upstream 124078 22618094 ~ 22641761 (-) False bmper
TU268720 other downstream 733320 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 745410 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 989989 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1018876 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 1033105 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 79817 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 663093 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1277508 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1686540 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1686540 24180556 ~ 24183964 (-) True G237657

Expression Profile