RNA id: XM_021593671.2


Basic Information

Item Value
RNA id XM_021593671.2
length 3574
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110514133
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22575947 ~ 22603330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCATCACTTCCTCAGTGGCTCGGTATTGGACGCAGACAGAGTGCTGCTATGTCAATTGACATACAAGACGATTATCACTCTTTTGTCGTTCAATGACCTGTATAGCGCTTTGATATAGATATAAATATTTCAAACATCGTTTTTATCATCGCTAACGTTGCAGTGTGATTGGGCGTGTTCGTGAAACTCCTGTCACGCGGTTAGAGCGTCCCTTGGAAATTGGCTTTGTTCGCTCCGACAGTACACAGTCAGTCTGTCTGCGTTATCATCCAGAATGGACCATTTGGAGAAGGAAAATAGGTCTGACGAAGATTCGGAATACGAAGAAGAGGAGGTGGACCCTAGAATTCAGGGAGAACTGGAGAAACTCAACCAGTCCACAGATGACATCAACAGATGTGAGACACAACTGGAGGATGCCAGGCAGAAGTTCCGCTCGGTGCTGGTTGAGGCCACGGTGAAGCTGGATGAGCTGGTCAAGAAGATTGGGAAGGCGGTGGAGGAGTCCAAACCCTACTGGGAGGCCcggagagtggccagacagGCTCAGCTGGAGGCCCAGAGAGCCACCCAGGACTTCCAGAGGGCCACGGAGGTGCTGCGTGCGGCCAAGGAGACCATCGCCCTGGCAGAGCAGAGGCTCCTGGAGGAGGACACCAGGCAGTTTGACTCAGCCTGGCAGGAGATGCTCAACCACGCCACCCAGAGGGTGATGGAGGCGGAGCATACAAAGACGCGGAGTGAGCTGGTGCACAAGGAGACGGCAGCCAAGTACACGGCAGCCATGGGCCGCATGAAACAGCTGGAGAAGAAACTCAAACGCACCATCAACAAGTCCAAACCTTACTTTGAGTTGAAGGCAAAGTACTACCTACAGCTTGAGcaccTAAAGAAGAACGTGGATGAGTTGCAGGCCAAGCTGAGCCAGGCTAAAGAAGGGTACAAGACGGCTCTGAGAAACCTGGAGATGATCTCAGACGAGATCCACGAACGCCGACGCAACTCTGCCATGGGCCCCCGGGGCCGGGGCGTGGGCGCCGATGGCGACAGTGTCGCAGTGGATGACATCGCCAGCTTCAAGATGGAGTCAGATGGCATCTCCAtgACGTCCGAGTCGTTTGAGGATGAGACCTGCAGCAGCAGTGCCATGTCAGAGGAGGACTCAGAGACCCACTCCACCTGCAGCCTGgtctcctcctcccactcccccAACAGCCTCCAGGACCTCCCCTCGCCCTGTCCCTTTGCCAGCTCTTCCTCGCCCTCGccctgcccctcctcctcctcttctcctgctccCTCCTCACGCCCCTGCAGTCTGGACCTTCCCAGCCCAGTCTCGCTGTCTGACTTTGGCCTCATCTCTCCTGTCCTGGGACCACGCAGCGAGTGTAGCGGGGCGTCATCACCTGAGTGTGAcctggagagaggtgacAGAGCAGAGGGAGCGGAGGGTGAGCTGGACAATACTGTAAACAACAACAGCACCACCGTCCCAAACACCAAGAAGACCACGGGCCTGGAGGGCCGCCTCAGCTTCCTGTCTCTTCGACGCTCGCGCAACGACAGCACCAAGAACGCCAAGCGCGAACGTCAAAGCCGTTCCCAGACCCCCACCCAAACTGTGGTTCTGATCAACGGGGTGTGATGAGGAAAGCTAATCCACAAGCTAACCCCATCACCGGCTTTGTGTGCCAACGTGCTGTATTGCCAGtaaccacacacacattccattCTACCCCATGAACTAATACTGGCTAAGTAAACAGAAAGTGGCTCAGTATGAGATGCTATGAACTAAAtggtcagtgtatatacagtTCATATGGATTATGATGAGAAGAGACTTAAGACCCAACCCAGGGTGAGTGATGTCATGAAACCACCACTTCCTATAGAAAGGACCTTTCACCCTTTGACCTCCCTCCCATAGCGTTGAGACCTCAGTCAGATTGGCTTCCCATAATTCCCTACTGTACTCCACACACATTAAGGACAGTGCTGGCTAACATCCTATGGGTGGGGGCCCATGGTATATGAGGGGAAATGGGACAAAGTGTTTTTTTTACTGTGATATTCTCCCTGAGAGGGAGCTGCACTTCTAGACAAGATGTGATTCTATTGTTGGTAAATGAAAGAATGAACTCCTAGCTTCGACTATTAAAAATGGGGATTATTTATAAAACCTGATGTCTCAGTGAATGTGCCACCTGTTTTACCATTACAGAAATTTGTCAAATACAAAACATTGATAGCAATATGTGTTATGCTTTTGTAAAAGAAGAGCACGCATGAGGCCAAGATTTAAAGTCAAGATTTCTAAAAAGAAATAAGTACATTTATGGAGTTGAAGTTTTGTGAATAACCCTCATAACTTGTAATATTACTCTGCTATATCCTCTCTCAGATACTTGACATGTGAATACTCTCACCATTATGTAATCCTGTGTACGGCTTATAGAGCCTATGGCAACTGCTTTGTTACCATGGAGACGTAACACCCCCCTGGCTGGTATCTCTTCGGACAGCCTGTGCATTTGTCCAATAGGGGTCTTCAGAATTGGACTTAAAATAACTGTATTCTATTGCACAACTAATTTCCCAGTGAGCTAACTGTGAATCCATCTCACCTGCAGTACACATAAAGCTGGACTTGGAATCTGATTGAACGAGAGTATAATAATTGTGTGGGGTGAGGCTACAGTAGATATACCCTCCCCTCTTTGCTCCCTCCATCCTGTGGTTCTTCGGTGCCAGGGAAATGGGCCTCCAGACACTGTCACCCCCTCTAgccctccttccatccatctccctGTCATGGCATCCCCAATGGCCCGGTACTGAGGGACAACATCCACCCACGGACGGTAACACTAAGAACTGAGCAATAGCGCAAGGACAGAACTTTTGATAACCATATCTGCCCATGGACACATAGAGTTCATATAGAGTTCTCTGTAACGGAATGCAAATGGCCAGCCTGGTAATTCTCAGAATCTGAGGATGGTTTTGTCTTGGACCAATCTTGAGGATAAAGTGAAACTAGATGACTGAATGAAACTGATGGTGAAGAATGATGAGGCCTTTTGTGGAAACTGACAGAATAATTGATGAGTGTTGTGATTTCTGATGGACAGTATCAGCTACAGTAAGTTGTAGATCCATATTGGCTAAAGTGGCACACAGTAGACTGTCAATGTTTGTGAGGCCTAGTCGTCTGTCTCAAATAGTGTTAAATTGTCTTCCTCTCCTGGTCTCCTTATGCTCCATGGCCACATGGGAAAGGTATTTGGTCACTGAGTTATGAGAAAAGCAAGCTATTGCACAAGCGTATGCAGTCTATTTGTTATTGTGAACGCTCCAGTCTATGTATGTAGTGTACGTGTACAAATGTAATGATGTGTCGATGTTTATCTCTGTCACCCTCCGCTGTGGAATATAAGGATATGACCATGAACAGTCCTTGTCATAGCCGTTTTCTTCCATTATGTTAAGAGTAACTTTCCATTGTGTCTCCAGTTTATGTGCCTGTTTTCTGAAAATAATCCAATAAACTGATGTTCACTGCAGTAA

Function

GO: NA

KEGG:

id description
K23739 SH3BP5; SH3-domain binding protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269586 lncRNA downstream 49926 22525403 ~ 22526021 (-) True G235860
TU269492 lncRNA downstream 80023 22495050 ~ 22495924 (-) True snrnp48
TU269576 lncRNA downstream 127722 22447092 ~ 22448225 (-) True LOC110503922
TU269572 lncRNA downstream 147423 22428231 ~ 22428524 (-) True G235846
TU269569 lncRNA downstream 151418 22424213 ~ 22424529 (-) True G235843
TU269655 lncRNA upstream 4547 22607877 ~ 22608110 (-) True G235921
TU269699 lncRNA upstream 68945 22672275 ~ 22698611 (-) True G235959
TU269677 lncRNA upstream 78939 22682269 ~ 22685521 (-) False G235938
TU269678 lncRNA upstream 78939 22682269 ~ 22685521 (-) False G235938
TU269676 lncRNA upstream 80259 22683589 ~ 22685521 (-) True G235938
XR_002470693.2 mRNA downstream 27055 22547800 ~ 22548892 (-) True LOC110505130
XM_021593645.2 mRNA downstream 69269 22499445 ~ 22506678 (-) True LOC110514079
XM_021593606.2 mRNA downstream 80043 22488821 ~ 22495904 (-) False snrnp48
XM_021593613.2 mRNA downstream 81931 22488821 ~ 22494016 (-) False snrnp48
XM_036972237.1 mRNA downstream 87925 22471363 ~ 22488022 (-) False LOC110513982
XM_021593683.2 mRNA upstream 5274 22608604 ~ 22611971 (-) True LOC110514157
XM_021593677.2 mRNA upstream 14764 22618094 ~ 22641761 (-) False bmper
XM_036972392.1 mRNA upstream 14764 22618094 ~ 22641761 (-) True bmper
XM_036972410.1 mRNA upstream 40511 22643841 ~ 22847832 (-) False bbs9
XM_036972409.1 mRNA upstream 40512 22643842 ~ 22848755 (-) False bbs9
TU269608 other downstream 958 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 820446 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 832536 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1077115 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1106002 21469661 ~ 21469945 (-) True G234600
TU270901 other upstream 553779 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1168194 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1577226 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1577226 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1917889 24521219 ~ 24521544 (-) True G237832

Expression Profile