RNA id: TU269182


Basic Information

Item Value
RNA id TU269182
length 4399
lncRNA type sense_over
GC content 0.42
exon number 5
gene id LOC110514168
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22612036 ~ 22618089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGGAGTGGTCATGTGACTTAGGGATTGTTTTTCAAAATAGCTTAGCTAGCTGCATAGCTAGCTGAAGTATCTTATATACTACGTTATTATCATTCACTTTTATAACGCAGCATAATTTAAATAAATGGGAATATTAAACTTCTAGCAGAGTCATGAATGGGAGTACAAATCCGCTCTTGGACAAAGAAGAACATGTTTTGAAGCTCGGAGAGAGCTTTGAGAAGAGGCCAAAATCATCATTTCACACCATCAGATATGATTTCAAAccagcttcaattgacacaagctGCGAGGGAGAGTTGCAAGTCGGTAAAGGAGAGGAAGTCACCATCACATTACCTCACATTCCAGGCTCTACACCACCCATGACAGTATTCAAAGGGAATAAGCGGCCATATCAGAAAGACTGTGTTCTTATCATCAATCATGACACTGGGGAGTACATGCTGGAGAAGTTGAGCAGCAGTATCCAGGTCAAGAAAACCAGGTGTTAACCAAAACACTGTCTCAAAAATGCATAGTAACAATTAACCTTTAGGAGAAGTGTGTTTTGCAGATCATTTGTGACAGTACATGTGCAGCTGTTGACTTTTGTTTTTCAGAGCGGAGGGCAGCAGTAAGATCCAGGCCAGGATTGAGCAACAGTCGGTGCGTGCCACTGCCACCCAGCCTCCAGCGCAGTTCCGTGCCCCCACTAAGCCTGGTGCAGGGGCCAAgacctccccctccccttccaaGGACAACCCCTCCCCTGAGCCCCAGCTAGATGACATCAAGAGAGAGCTGCGAGCGGAGGTGGATGTTATTGAACAAATGAGCCGCAGTAGCGGCAGCAGCTCATCTGACTCTGCCAGTGGCTCTGGTAGTGGGGACGACAGCTCCAGCAGTGATGGGGAGCATGACGCCCCTCATCCCCAACctgtcccactccctctcccccacatCCAGCCCTCCCCCAACCCCGTGGTCAACGGAGGAGCAGACAGGCAACAGGGCAGCAACCAGCTGATGAACACGCTCAGGAATGACCTCCAGTTGAGCGAGTCAGGCAGCGACAGTGGTGACGACTGAACtgcccccagtctctctcctgccctctctttctacctctcatTATTACACCATCTTGCTTTCCTCTTTCTTCTCTTTGCCTGGTTCCGTTGTTTCGTTGCTGTGGTAACCGAcccaactgtaaagtctggttttattgtattttttaatgTCTCTGTGAAGCCAGCGAACCTGGAGATTTAATAGTGTATTTTTGATTAGCTgtatattttgttttgtatttttaaatacttttacatATGAAAACATGCTAAAGAATATATATTAGAATGCATGTACATATTTTCTGTAGTTAGAGCTCCTAGTTGTATCAACTTGTAGCACAAGTCTTTGTTGTTTTCTTGTTTCATCACAGGGGATGAATATCACCCCCATCTTCCCTATTTATCTGGAAATCAAAAGAAGGCACTGAAAGCATTTCACCCATTCCATGTTTTTATCAGTATCATGACACTTTCAAAAATCAGTCTTTCAAGAGGCCAGGGTACAGCTCACATCGATCTAAGCTACAGATGATACAAAAGGACATACTCATATTTTTTATGTAAAATCAGTTTCTAAAGTTTCAATTTACCACTTAAAGGTTTTAGTTGGAATATTGACCTGTTCTGGTGAACAGGTAAATATCAGTAACATGTAAATGAGCCGGGGTCAATCCTTTACATGTCAAAGCACTTTAGTTTATTTGTCAGCAGTTTCCACCTAAAATATTTTGCATTGCTTTTAACAGCACCTTTCTGATCTTTAAATGCAACTAACACCCAGTACTTCGAGTTCACCATACCCTTCATAGCTAATATTCTACTATTTCCACATCAATCATTTTACTTTCTGATTCTGTCTCACTCAATAGCTAGGTATCCATCctattggtgacagattttcatgcgaatattctaaaatccgcatTAAAACAATATGTGCAcattcccaccagagatgtttccatcacattgacttgttgcggataacagtctgtgcgtgatgacgtagtgcacataaaaacacCTTTTGCGATTTAATTACCattaaatacaagttaaatgggtttccgtCGCATTTGCTGTTCTTTTAAGAAAAAATGTTGCGTTATATTGCGAATCTCTGGTCTTTgcacgtgcgctctagccaacagtttgcaggtaggctagtctacatgatgagattattacgGATAAGAGCAtgattatttgtatttgtcaaacggcagccaagcatcgatcatcatgtcaccagaataagaccctcgatatttattggaaaggctcatcaccgtgcactttcaccaccctgtgaagtttatCATTTATTTCatatagcctaataaactgtatgccttcctgagtcgtagtgggaggaccacacaatatCACGACTCCAAATGTACTTCTATATGACAGTTATTacatcaatatttgcacataaatgCGTTTCCACCGATatttctcgcataattcattttacagacagaaaaagatcccaccttgtctagcgtatttaGTTTTGTCGaaatttggaaagtttaccgacaaatgtgctgtttccatcaggcctgtcgtggCATTTTTTTAATccgactttactcgcataaaaaggttggatggaaacctggttactggcccaaccatATATCACTGTCCAAAGTTCCCAACCATATATCACTGGGCTAGTTTCAGACCTGTGTAGACATTTTTAGAAGTACCAAAGAAGCAAAACAAGTAGTTTTTAGAATACAGACGCTGAACATCTATTTTTACTCAGATATAAGTCTATTTTCATTAGACTGAGTTACTCATAACATGTAACAGCTGCTATACATTGACCACTTGTTTTTTCATTAGTTCCATAGATTCAACAGATTTGAAGTGATAGCAGTCACATTGGATCACATCTTTTAATTTAGCAACTGTTGTGACAGTGATCAATAGCGCGCTAGAATCTGCGCAGATTAttatagcaattgtgaagatcaCCACAAACCTGCGGTGTTTGCATGCTATCTTGGAACATGCCCAATTTCTATTATTACAGAAGATATTTATAGTTACTGTAGGCTAACCTCAAAATTTGGCCATGGATgcgtgttactcattttaaggttgaataaatacctttacattagtttgtaaaatAGCCTAATGCTTGGATGgtttcatctgagccactggcttaatcctattctttaacttttatttttggtttagttggagacgtgaatccaacatataattTGTCGTCAAAttaataggctatttactgtattgcaaaaattatattgaattgtgtttggttgtcaacacaaccaaatatcaacatttgaaggagatgtatcttttTTTGCCACTGACTTAGtatggctttaattccagtttgtctacatgAATTTATGTCAACCAAGAATCAAAATGAAAGAATATGACTAAATCAAAGTTGAAGTGCATTTCAAGTTAGAtgtgatttagtcctattctttaacttagatttttggttgagatggagacatgaattccacatatcaattattaatttgtagacgaactggaattaaagccagactaagtcagtggcacagatgcaACTATCCAATCAGAAGATACATCTCCtacaaatgttgatatttggtgacaaatatcaaagctaagcaggaatgggcttggttaaaaccctggatgggagaccaaatgaATAACTGTATATAGATCATCTCTCCAACAGAAGGTGCTGCTGAgcctattgtttttttttctgatagtggatatgtcgttgaagatctgacgttgtttcaaaggtacaaattcaacatattttacacAAGGGTTGTCTTTGTTGAAAAGGGGTTACAacgatgacataatcctgtggttgacatttcaccctcaaaacaatagttttttcaaatccaatatattttccacatagattccatgttacaatacattgacaaatttacgttgaaacaacattgattcaaccagtttgtgcccagttcGGATGTGTGTTCATAAGGTACTTAAATGGTATTTAACTGGTGCTGTTGTGTGTCTGGGACATGGGTATACAAAtgtaatatgttttgttttcacaGCAGTTTGGATCCATGAACTTGGATGGCTAACGCTATTTCTAATTTGTGTCTCTCTGGCATCCAGTGTTATTTCTGACCCATACTGTTACTGTCCCAGTACAACCTCTCTTGCCACATTTATCAAAGTGGTTGACTTCTATCTCTAGTTTTATGTGCTTTGACGTTTATTAAAGTGTGCACATGTATTTAAATTGGAATTAACTTTTTATCAGTCAACCAAAATAAAGGAAGAAAACAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269250 lncRNA upstream 5458 22606385 ~ 22606585 (+) True G235564
TU269249 lncRNA upstream 5929 22605903 ~ 22606114 (+) True G235563
TU269231 lncRNA upstream 32236 22579478 ~ 22579807 (+) True G235545
TU269153 lncRNA upstream 123840 22482472 ~ 22488203 (+) True LOC118947118
TU269165 lncRNA upstream 151577 22459160 ~ 22460466 (+) True G235495
TU269261 lncRNA downstream 55436 22673525 ~ 22685509 (+) False G235569
TU269260 lncRNA downstream 64397 22682486 ~ 22685509 (+) True G235569
TU269284 lncRNA downstream 116675 22734764 ~ 22735540 (+) True G235580
TU269326 lncRNA downstream 140455 22758544 ~ 22759003 (+) True G235619
TU269412 lncRNA downstream 230768 22848857 ~ 22849200 (+) True G235704
XM_021593667.2 mRNA upstream 36933 22557122 ~ 22575110 (+) False LOC110514114
XM_021593660.2 mRNA upstream 36933 22557162 ~ 22575110 (+) True LOC110514114
XM_021593647.2 mRNA upstream 67944 22513124 ~ 22544099 (+) False LOC110514095
XM_021593653.2 mRNA upstream 67944 22513126 ~ 22544099 (+) True LOC110514095
XR_005041774.1 mRNA upstream 125527 22486052 ~ 22486516 (+) False LOC118947118
XM_036972415.1 mRNA downstream 251651 22869740 ~ 22893776 (+) False LOC110514282
XM_021593753.2 mRNA downstream 251744 22869833 ~ 22893776 (+) True LOC110514282
XM_021593782.2 mRNA downstream 501294 23119383 ~ 23133074 (+) False LOC110514335
XM_036972419.1 mRNA downstream 501294 23119383 ~ 23133074 (+) True LOC110514335
XM_036972423.1 mRNA downstream 592329 23210418 ~ 23226089 (+) False smarcc1a
TU269168 other upstream 139126 22460540 ~ 22472917 (+) False LOC110514034
TU269171 other upstream 139126 22460540 ~ 22472917 (+) False LOC110514034
TU269172 other upstream 139126 22460540 ~ 22472917 (+) True LOC110514034
TU269077 other upstream 307137 22304493 ~ 22304906 (+) True G235426
TU268548 other upstream 543963 22058679 ~ 22068080 (+) False LOC110503910
TU269263 other downstream 54647 22672736 ~ 22698834 (+) True G235571
TU269259 other downstream 55436 22673525 ~ 22680728 (+) False G235569
TU270030 other downstream 531063 23149152 ~ 23180299 (+) True G236271
TU270066 other downstream 580763 23198852 ~ 23199075 (+) True G236301
TU270145 other downstream 728791 23346880 ~ 23349378 (+) True G236370

Expression Profile