RNA id: XM_036972411.1


Basic Information

Item Value
RNA id XM_036972411.1
length 5052
RNA type mRNA
GC content 0.52
exon number 22
gene id bbs9
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22643841 ~ 22848755 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTTGTGCGTTTCCGATCATGCGCGCATGTACTCGAGTCTATCGTTAGTGTCACTGCTATGACAACAGGGAGATGGCTTCAAGCAAATTGATGAGGCACACGCAAAATTAGATTTTTATCTGAACTGCGAACCCCAGACAGGCTCGTCTTGTTAGAGTAGTATGTCTCTGTTCAAGGCACGTGATTGGTGGGCCGCGGTGCTGGGCGAGGGGGAGGAGTTTGACCAGGGATGCCTGTGTGTCGGAGATGTGGACAACAGCGGTAGCGGACATGATAAGATCGTGGTGGGCAGCTACATGGGCATGCTGCGGGtcttctccccccaccctgcCAAGCCTGGAGAGCCCAGCCCGGCCCACAGCCAGCTACTGGAGGTGCAGCTCAGAGACCCCGTCATCCAGGTTGAAGTGGGCAAATTTGTCTCGTGTTCAGATCTGCTTCATTTGGCTGTGCTGCACCCCAGAAAACTGTCTGTGTACTCCATCTCAGGTACTGCTGGTAATGTGGAGCATGGGGTTCAGTACCAGCTCAAGCGGGTCTATGAGCACAACCTCCAGAGGACCGCCTGCAACATGACCTATGGAACCTTCGGAGGGGTCACAGACCACCACTCTATGTGTATCCAGTCCATGGATGGCATGCTGATGTTCTTTGAGCAGGAGAGTTACTCATTTGGCCGTTTCCTCCCTGGCTTCCTCCTGCCTGGTCCTCTGTGTTACTGCTCCCGCACTGACACCTTCCTCACTGTGTCCTCAGCACGACAGGTGGAGAGCTACAGGTATGAGACGCTAGCGGTGGCCACGGATGCAGAGACCAGACAGGATGCTGAGCAGCATGGCAAAACTGCAGGGAAGAGACTGACGGCTGACTGGACCCTGGTCCTGGGGGAGCAGGCCTTGGACCTCAGtgtcccctccttctctccgtcCTCATCCTCCATCTTTGTTTGCGGCGAAAGGAACCTGTACTGCCTCAAAGACAACGGACATATCCGCTTCATGAAGAAACTGGAGTACAACCCCAGCTGCTTCCTCCCCTACTCCTCAGTGTCTGAAGGCACCACCAACACCCTGGTCGGTAACCATAATAACATGCTGCTGGTGTACCAGGATGTAACGTTGAAGTGGGCAGCCCAGCTCTCCTGTTCCCCCGTGGCTGTCAGGCTCGCTAACTTCCCGGACCTGAAGGGTGTGGTGGTGACCCTGAGCAATGAGGGCCACCTGCAGTGTTCCTACATGGGCACAGACCCCTCCTTCTTCTCCACGCCCAAGGTGGACGCCCGCGAACAGGACTACTCCCAGATCGACACTGAGATGAAGAGTCTGCAGAGAGTCATCAGACAGGCCACCAGGACCCAGGctgATATTCTTCCTGTCGCAGAGACAGATGAGGATCTGACTGTTACAGCCACAGTCTCCACTAACATGGACAGCACAtcgcAAGCGCTCATCCCGGACATTGATGGTCTACCCGTCCCCTCAGTCACAGTGAAGATTAAGGTGACGAGTCGCTGTGCGTTGCAGGgtcctaaactgactgtgtgtgttcagccTCCACTGGCTGTCACCCAGGATCAGCTTGTGTTGGAACCTCTGGGTGTTGGGTCTACCACTGTGGTGGCATTCTCTGCCTTCCTGAATGGGCAGTATCCACCAGCAGACCTGACAGGAGACGTGGCCGTATCTTACAGCTCtcctacagGCATCCCGAGGGTGGCCCAGTGTAAGTTCTCCCTGCCCCTCCGTCTGGTCTGCTGCCCCTCCGCCCCCTCCAAGAACGCCAAGTATAAGATCACTGTGGATACCAACAAACCGCCGGTCAACCTCAGCGAGGTCTTCCCAGACTTTCTGGAGAAGTCTGAGGACAAGGAGGGAAACGCTCTGGCCTTCCACTTCCTCTCAGGGCCCAGAGTCACTGTAATGGCCTCCAAGACCTcccAGCGCTACCGTATCCAGAGTGAGAGTTTTGAGGACATCTGGCTGGTGGCTAAGGAGCTGGTGCAGCGCTTCGACCGCCACTTTGCCAAGCAGGGAGTCAAAGACTTCAGAAACAGCTTTGCAGGCCCTATACCTCTGGCTGAGTACTTTGAGACTGTCGACCACCACTTTGAGcTGCGTGTGAGTGCAGAGAAGTACCAGGACCTCCTGTCAGAGCGGGCGGTCCAGTTCAGAGCCATCCAACGCCGTCTCCTGACCCGCTTCAAAGACAAGACCCCCGCCCCCCTACAGAACCTAGACACACTGATGGAGGGCACCTACCgccaggtgaTAGCGTTGGCAGATGCAGCGGAGGAGAACCGGGCATGTCTGAATCAGGCGTTTGTCCGTCTGCGCAGCGCCAcccacctcctcatcctcctggTCTCCCTGTGGCAGGGCCTCAACACAGAGCAGAACGCCATCCTGGAGGCTACGCTGTTACCCTTGCTACAGGACACACCAcagctgggttggGAGGAGAGTGTGGACGCGGCCGTGTCTCACCTCCTGAGGACCTGTCTGTCTCGCAGCCCTAAGGATCAGGCCCTGTCTCTGTCCACCTCCCAGCTCAACATGCCCAAAGACACGGTCCGCCTGAAGAAGCACATCACCCTGCTGTGTGACCGCCTGGGCAAGGGTGGACGGCTGTCCCTGGCCTCCGAGGCCAACGTACCCACACCAGTCATGATGCCagGGGGCTGTGAGCCAATCGCGGAGGCTGTTACGGACCTGGAGGAGCCGCCCTTGCAACAGGAGTCTGCCACCAAGTTCATCAAAAAGAAACAACCGTCCAAGAAAGTCAAGTCCAAGACAGATAAAGAATCCAAGGACAAGAAAGTGTCTGCTGAGGGAGCAGTCAAGgagacagtggaagagactgcAGAAGAGCCTGTGAAAGAAGTGAAGAAAGAAAAGAAGGAGTCCTCTAAGGAAAAGAAGGAGTCGACCAAGGAGCCTAAAGAGCCCAAGGACCCTGGGAAAGAGTCAAAAAAGGAGTCTTTGAAAGAGTCCAAGGAAAAGAAGGAGTCCTCCAAGGAAAAGAAGGAGTCCTCCAAGGAATCTGGAAAGGAGTCTTCTAAGGACACCAGCAAAGAGTCTTTGAAGGAGCCTGGGAAAGAGAAAGTGTCAAGAAAGTCATCTATGAAGGTCaaggagaaaaagaaagagcCAGATGCTGCTGCTGGAGAGGGCTGATAATTTCATGCAATAAATACATTCagttacacacacccacacacagtctcacataTACACTCATATTCATTGACAAACACACTTCTATCAGGGCGGATGCTGGTCCATAGTCAGGACTTCTGGTGTCTGTGTTAGATGAAGGTGTGGTGCAGAAGATGAGGCCCTGTCAGAAACTTCAGTAGAACAGTCTAGGAGTTGGACGTGCGACATCAAAgcccttcccctcccttccttccaGTGGCAGCGTCTCGCAGTGGAACCCACAGCCCTGTGCGTCGGTAAGCCCTAACCACCCCGCCTACACGCGGGCACTCTGACATCTACCCCGCCCTCTCGCCCCCTCGTGTGGCACCATGCCTTGCCAAAGCCACCCCCGCCTCAGGCTAAGAATAACCCCCGCGTTCCGTCCATCCCTCCGTATGTCCCCTCGGGTAAAACGAGGTCACTTTCACCCCCCATCAGCAGCTTTCAGCACACAGAAGCAGGAAAACCATCAAACTGAGACAATAGCAGAGAAATtaaaagcgggggggggggggggattcaagCAGCCCTCATGATCTTTTGTGAGGACTTGCAGGAACATACTCAATCACACACACCTGAAtccacaaacacatgcacacaaacacaagaATACAAACATGCACAACCATACATGTAAAAACACTAGCTAGCACCTGCTCGTATTCTGCAACACACAGCCCTGCAAGCGGTACAGTGTTTCCAGCCAGCCAGACCACCTTCTGTTAGAGGATCGCTGTGCCAGCCTGACCAATGACAATCCAAACAGCTctttgtattgtactgtacctgtacgtcctgtatgtgtgtgttgtctgtacgTGTCTTGATGAATTTAGATGTGTATCGTTTCCTAACTCAGCTTAATGAATATATTATAGCAAAGGTTTTGTACTGTAATCAGCTAGTCTGATGCACCAGGCACCTGTTCTATGCCTGTTTTTGTAGACAAAGCAGGGTGATTCAAGTTAGTGCTATGAAACTATTGTTTAATGTTTGTATCTTCTTAATCTCCCTCTGTATGTatgtctttctttctccctttaGGTCTGTCTCTTTTCACTCCTTGATTACTGAGTATGAGGGACAGTGTGTATGTTAGAGTATATAGGAATGGTCACTGTTAAAATGACTTTGTCCTTGGCCAGTGGCTTTAGGTTTGTTTTTTTCCTTACTGTTGTGTAAAAGGTCTGTGCAAATTTTCTTGAGCTCGGCACACGTAACTGTGAGACTCACTGTTTCATTTGGCCCGGGTGGTTTGTAGATGTTGCGTTAAAGTCACGTTGTGGGAGAAGATGGGGATGGACTCCGGCGGACTCTCCTCTCAGGTCTGTGTTATGTTATGTCTGTTTGACGTCAGTGGGTTCACTTTTTTTTTATTCTCCTCAATAACTTGTGTCTTTGACTAAACGCTTTGTGGCGCTCTGTGTTTCACAACATGAATGTTGTTCACGTGCAAAAAATGATTGAACTAGGACCAAACATTGTTACATGCCCCACTGTGAAAAACGAACAGTGCCGCACAGTTTTGAGAGAATGTAATAAAAAGCCCTTTGGATTAGACTTTTAGAAACAAATGGGTTGGTGTCATTTTTATTAAAGAAGCTGTCTTGTGAGAGGCTTAGGAGAGAATGTATATCGGATGTATGTGCATCAGAACAGTATGTAACGCTAATGTGTATCTGAGAGGAGATGAACTGTTATCCCTACTTCCCTGTGACAAGCTTGTAAAACGATGGAAAGAATTGAGTGTAGTAGGTCCCAGCCCCAGACTAAATCTACAGCTCCCACAATGCTCTTTGATAAATGCCTCTGTTTTTCCTCTCCCCTGTCTTAAAGAGACACTTATTTTCT

Function

GO: NA

KEGG:

id description
K19398 BBS9; Bardet-Biedl syndrome 9 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269655 lncRNA downstream 35735 22607877 ~ 22608110 (-) True G235921
TU269650 lncRNA downstream 43053 22599830 ~ 22600792 (-) True G235916
TU269633 lncRNA downstream 58991 22582825 ~ 22584854 (-) True G235900
TU269586 lncRNA downstream 117824 22525403 ~ 22526021 (-) True G235860
TU269492 lncRNA downstream 147921 22495050 ~ 22495924 (-) True snrnp48
TU269790 lncRNA upstream 89 22848844 ~ 22849153 (-) True G236049
TU269833 lncRNA upstream 48565 22897320 ~ 22897536 (-) True G236082
TU269835 lncRNA upstream 50962 22899717 ~ 22899933 (-) True G236084
TU269836 lncRNA upstream 51772 22900527 ~ 22900770 (-) True G236085
TU269838 lncRNA upstream 55637 22904392 ~ 22904633 (-) True LOC110514303
XM_021593677.2 mRNA downstream 2084 22618094 ~ 22641761 (-) False bmper
XM_036972392.1 mRNA downstream 2084 22618094 ~ 22641761 (-) True bmper
XM_021593683.2 mRNA downstream 31874 22608604 ~ 22611971 (-) True LOC110514157
XM_021593671.2 mRNA downstream 40515 22575947 ~ 22603330 (-) True LOC110514133
XR_002470693.2 mRNA downstream 94953 22547800 ~ 22548892 (-) True LOC110505130
trnap-agg-7 mRNA upstream 469 22849224 ~ 22849295 (-) True trnap-agg-7
XM_036972414.1 mRNA upstream 750 22849505 ~ 22854858 (-) False LOC110503928
XM_036972412.1 mRNA upstream 750 22849505 ~ 22866403 (-) True LOC110503928
XM_021593758.2 mRNA upstream 18860 22867615 ~ 22869747 (-) True LOC110514295
XM_021593764.2 mRNA upstream 54974 22903729 ~ 22915153 (-) False LOC110514303
TU269608 other downstream 68856 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 888344 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 900434 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1145013 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1173900 21469661 ~ 21469945 (-) True G234600
TU270901 other upstream 308354 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 922769 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1331801 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1331801 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1672464 24521219 ~ 24521544 (-) True G237832

Expression Profile