RNA id: XM_036972412.1


Basic Information

Item Value
RNA id XM_036972412.1
length 2744
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110503928
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22849505 ~ 22866403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAATTTGGCAGCAGATGGGGGGAATTTTCATTGTAATTGATTAGTCCTTCTTGTCTAAAACTTGCACCATTGGTTATGTAGGTAAATCTTTTTCTGCAGACAATATCTGAAATGCAGACAAAAATATTGCGAAATACAGGCATACACCCTATCCTATTATTGGGCTATAGTAATGACTAATGTAATTAATTGTAATGAGTAATGTATTCTTATTAAATGTACGTATAGGCAAACATCTGTTTTGTTGGGGCTCGTTTCCATGGACGTGGTTCATACTAATTAGAAACAAATAATACGGAAACTGAAAATGTGTATCAATTTCTTCATTGTAGCATTTTACTCTATGCGTTACCAGCACAATTACAACAAATATTTGGGTTCGTTTGGTGAAATACCCCTGGATGATTAAAAGATGTTGGTATAAATACACATCAAACCCCCCGCTTTCACCCGAGTGGTAGCGATAGGAGGGCACGTACGTACGTAGTCCGTTACAGTCTCAGTCGCCAATCGACTCGAGGGAGGGACCATGTTGACATAAGGAAGGAGTAGAATCGTTTGTTTGGAGCGGCACAACCATGGACAAGACTGCCGTGGTAAAAGTCGGTGCCGCGGCCAGTGCCAGTGTATGTGCCCTGTTCGGAGGTGTGGTTCTCGCCCAGTACATGTTCGCCAAGAAGAAGAGAGCGGGAAAGAAAACGAAGATCATCGAGATGatGCCAGAGTTTGAGAAGAACACGGTCCACATGAGGGATCCAGAGCGGGTGGAGCAGATCATCTGTGGCATGATCAAGGGTGGCGCCTCCAAACTACAGGTCATCACTGACTTTGACATGACGTTAAGCCGGTTCGCAGTCAACGGCAAACGCTGCCCCACGTGTCATAATATCATTGACAACTGCAAGCTTGTCACCGAAGATTGTAGGACGAAGTTACTAGAGCTTAAGAACACATATTACCCCATAGAGATCGACCCCCATCTAACGATGGAGGAGAAGTATCCATTTATGGTAGAATGGTATTTTAAGTCCCACACATTACTGGTGGAGCAGAGGCTACAGAAGGACAAACTCTCAGAGGTGGTGAGAGACTCGGACGCCTGCCTGAGGGAGGGCTATGAGCCATTCTTTGACCGGCTCCAGCAGCACAACGTGCCCGTGTTCATCTTCTCAGCGGGTCTGGGAGACGTCCTGGAGGAGATCATCCACCAGGCGGGGGTCTACCACCCCAACGTCAAGGTGGTGTCCAACTTCATGGACTTCGACGAGAATGGCGAGCTGAGGGGCTTCAAAGGAGAGCTGATCCATGTGTTCAACAAGCACGACGGCGCCCTGCGCAACACGGAGTACTTCAAACAGGTGAAGGACAACTGCAACATCGTGCTGCTGGGAGACTCATTAGGTGACCTCAACATGGCTGACGGCGTGCCCAATGTGGAGAACATCCTCAAGATCGGCTTCCTCAACGACAAGGTGGAGGATCGTTTGGAGAAATATCTGGACTCTTATGACATCGTCCTGGTAAAGGACGAGACTTTAGATGTGCCCAATTCCATCCTTCAGAAGATTATATAACCCCCCCCACTTCATACTGACACACTTCCCCAAACCCATGGAAAATGAACCAACCTCTGGACTCCCAAGACAGATTTTACTGCCCCCCCCCCGCCACTGACTCACAGCCTCTCGACATACACTAGCTTTATATTCTCCTCTCAATGAACTATTTTAAAGTACACAGCCTCAGTCTTTGTCTGTCTGCAACCTTGTCGACGTCCTCCACTCCATAACAATAATTTGCACGTTATTGTTATtcataatatttttttatattgtaaTGCTTGTATCAGTTTGCAAATCATAAACCGAGCATCCACACAAGAACACAGCAACGTCTTTTGAAACGGTCCTAGCATGCATTTCACCACAATCACCTCATTGCATTCTGCAACAGTTTGGCTACAGGAATCAATGTAGGTCTGAAAAAATAACTTGAACCTGTCTATGGGTGAACAATACTCAGACATTGGTATGAATATTATCACTGGTTTTATGGATGTAGTAATGGATTCTGTCTTGCAGAAGAGAAGCCATGTATACACCTCATCAGTGTTCACATGGGGACTTTGCTACCATAGCCACACTGCAAAGTAGCACATTATTTTATAGGAGTACTAACACTGCACATTTTCTGTGCCATGTAAATAGACTGCATGGTTGTTACCCTATGGTGCTTATATCAAGAAATTAAACAATTGTCAATGAGTTGAGATAATAGTAGTAACTAGTGGTGCTAAAGTTTTTTATAAATGATGGGTTACTACTGTTAGTGTAACTGACTTTATGAACAATATAGTGTCAAATAAGGTGCTACCAAAAGTCATTACACAGAGGAAAAGTAGCCTGCTCAATTGGCAGTATATTACAAGAGAACACCACTGGGTAAAGCACCGTTGTCTGTGGATCAGCGAAGTTCAATAAGACTATTTTGTTTAACTTGGCCTTTTATCCACACCCATTGACCTGTTTTTAATTTTGTTGTTCAAATTTGAACTCTACCTCAAGCTTGGAAATgtttcctacccccccccccccctttaaatTTCTCAGTTTTGTCTTGCACATGTTCAATGTTAATTTTAAATTTTAGCATTTTAAATGTGCTGCTACTCCTGCACGTTGCCTTTTCTTAACTTTGAATTTGACAGAGGGGGGGAAACTTGTCAATAAAACTTGTCAAATAA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008253 5'-nucleotidase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K24242 NT5C3; cytosolic 5'-nucleotidase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269790 lncRNA downstream 352 22848844 ~ 22849153 (-) True G236049
TU269743 lncRNA downstream 78842 22769166 ~ 22770663 (-) True G236003
TU269702 lncRNA downstream 158034 22689891 ~ 22691471 (-) True G235962
TU269678 lncRNA downstream 163984 22682269 ~ 22685521 (-) False G235938
TU269833 lncRNA upstream 30917 22897320 ~ 22897536 (-) True G236082
TU269835 lncRNA upstream 33314 22899717 ~ 22899933 (-) True G236084
TU269836 lncRNA upstream 34124 22900527 ~ 22900770 (-) True G236085
TU269838 lncRNA upstream 37989 22904392 ~ 22904633 (-) True LOC110514303
TU269846 lncRNA upstream 54435 22920838 ~ 22921076 (-) True G236095
trnap-agg-7 mRNA downstream 210 22849224 ~ 22849295 (-) True trnap-agg-7
XM_036972409.1 mRNA downstream 750 22643842 ~ 22848755 (-) False bbs9
XM_036972411.1 mRNA downstream 750 22643845 ~ 22848755 (-) True bbs9
XM_036972410.1 mRNA downstream 1673 22643841 ~ 22847832 (-) False bbs9
XM_036972392.1 mRNA downstream 207744 22618094 ~ 22641761 (-) True bmper
XM_021593758.2 mRNA upstream 1212 22867615 ~ 22869747 (-) True LOC110514295
XM_021593764.2 mRNA upstream 37326 22903729 ~ 22915153 (-) False LOC110514303
XM_021593770.2 mRNA upstream 37326 22903729 ~ 22919447 (-) False LOC110514303
XM_021593777.2 mRNA upstream 171357 23037760 ~ 23051032 (-) False LOC110514322
XM_036972416.1 mRNA upstream 171357 23037760 ~ 23051032 (-) False LOC110514322
TU269608 other downstream 274516 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1094004 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1106094 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1350673 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1379560 21469661 ~ 21469945 (-) True G234600
TU270901 other upstream 290706 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 905121 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1314153 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1314153 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1654816 24521219 ~ 24521544 (-) True G237832

Expression Profile